miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26292 3' -54.4 NC_005345.2 + 20566 1.12 0.000714
Target:  5'- gGUGUCAAGCGUGACCGACUCCGUCGCg -3'
miRNA:   3'- -CACAGUUCGCACUGGCUGAGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 37589 0.77 0.190466
Target:  5'- cUG-CAGGCGggcGACCGGCUCgCGUUGCg -3'
miRNA:   3'- cACaGUUCGCa--CUGGCUGAG-GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 8700 0.75 0.289674
Target:  5'- cGUGggCGgcccGGCuGUGGCCGACucgUCCGUCGCc -3'
miRNA:   3'- -CACa-GU----UCG-CACUGGCUG---AGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 47372 0.73 0.364851
Target:  5'- -gGUCGAGCGgccugcccucccccaUGGCCGACggucaaaCGUCGCc -3'
miRNA:   3'- caCAGUUCGC---------------ACUGGCUGag-----GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 10042 0.71 0.474596
Target:  5'- cGUGUCGAGaCGgagaACCGACgacgccgaCGUCGCg -3'
miRNA:   3'- -CACAGUUC-GCac--UGGCUGag------GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 28546 0.71 0.474596
Target:  5'- --aUCAGuCGUGGCuCGGCUCCG-CGCa -3'
miRNA:   3'- cacAGUUcGCACUG-GCUGAGGCaGCG- -5'
26292 3' -54.4 NC_005345.2 + 6921 0.7 0.505602
Target:  5'- cGUGUCGAccucggcgcgcGCGUacauguccgcGGCCcAUUCCGUCGCg -3'
miRNA:   3'- -CACAGUU-----------CGCA----------CUGGcUGAGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 13144 0.69 0.591891
Target:  5'- aUGUCc--CG-GACCGACUUgGUCGCc -3'
miRNA:   3'- cACAGuucGCaCUGGCUGAGgCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 9182 0.69 0.591891
Target:  5'- cGUGUgCGAGC-UGAUCGACgccggggugCCGUaCGCg -3'
miRNA:   3'- -CACA-GUUCGcACUGGCUGa--------GGCA-GCG- -5'
26292 3' -54.4 NC_005345.2 + 38319 0.68 0.625036
Target:  5'- -gGUCAcacccuGGCgGUGACCG---CCGUCGCg -3'
miRNA:   3'- caCAGU------UCG-CACUGGCugaGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 32947 0.68 0.63611
Target:  5'- uUGUCGAGCGcgaGGCgGACgCCGgcCGCg -3'
miRNA:   3'- cACAGUUCGCa--CUGgCUGaGGCa-GCG- -5'
26292 3' -54.4 NC_005345.2 + 23896 0.68 0.64718
Target:  5'- -aGUUGAGCagGUGccgcacgagcGCCGACgagCCGUCGUg -3'
miRNA:   3'- caCAGUUCG--CAC----------UGGCUGa--GGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 24284 0.68 0.658236
Target:  5'- -gGUCAAGgGUGACCcGGCgugcuuugCC-UCGCu -3'
miRNA:   3'- caCAGUUCgCACUGG-CUGa-------GGcAGCG- -5'
26292 3' -54.4 NC_005345.2 + 38249 0.67 0.669267
Target:  5'- gGUG-CAGGCGUGAUCGAUgaCGU-GCg -3'
miRNA:   3'- -CACaGUUCGCACUGGCUGagGCAgCG- -5'
26292 3' -54.4 NC_005345.2 + 24856 0.67 0.691213
Target:  5'- -gGUCccgcGGCGUGACgGACgcgaCCG-CGCu -3'
miRNA:   3'- caCAGu---UCGCACUGgCUGa---GGCaGCG- -5'
26292 3' -54.4 NC_005345.2 + 9655 0.67 0.691213
Target:  5'- cGUGUgGGGCG-GGCUGACguaCCGcgagCGCc -3'
miRNA:   3'- -CACAgUUCGCaCUGGCUGa--GGCa---GCG- -5'
26292 3' -54.4 NC_005345.2 + 41577 0.67 0.702105
Target:  5'- cGUGcucgCGGGCGUGcucggucgugauGCCGuGCacggCCGUCGCa -3'
miRNA:   3'- -CACa---GUUCGCAC------------UGGC-UGa---GGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 1646 0.67 0.702105
Target:  5'- gGUGgCAGGCaggGUGACCGugUUuccagcggCGUCGUa -3'
miRNA:   3'- -CACaGUUCG---CACUGGCugAG--------GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 2368 0.67 0.712929
Target:  5'- ---aCGGcGCGUGACCucC-CCGUCGCg -3'
miRNA:   3'- cacaGUU-CGCACUGGcuGaGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 19811 0.66 0.723671
Target:  5'- -aGUCGacggucugcugcAGCucgGUGACCGGCaCgGUCGCg -3'
miRNA:   3'- caCAGU------------UCG---CACUGGCUGaGgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.