Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26292 | 3' | -54.4 | NC_005345.2 | + | 1646 | 0.67 | 0.702105 |
Target: 5'- gGUGgCAGGCaggGUGACCGugUUuccagcggCGUCGUa -3' miRNA: 3'- -CACaGUUCG---CACUGGCugAG--------GCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 2368 | 0.67 | 0.712929 |
Target: 5'- ---aCGGcGCGUGACCucC-CCGUCGCg -3' miRNA: 3'- cacaGUU-CGCACUGGcuGaGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 4651 | 0.66 | 0.7553 |
Target: 5'- -gGgggCAGGCGUGAagaCGACUCac-CGCg -3' miRNA: 3'- caCa--GUUCGCACUg--GCUGAGgcaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 6921 | 0.7 | 0.505602 |
Target: 5'- cGUGUCGAccucggcgcgcGCGUacauguccgcGGCCcAUUCCGUCGCg -3' miRNA: 3'- -CACAGUU-----------CGCA----------CUGGcUGAGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 8700 | 0.75 | 0.289674 |
Target: 5'- cGUGggCGgcccGGCuGUGGCCGACucgUCCGUCGCc -3' miRNA: 3'- -CACa-GU----UCG-CACUGGCUG---AGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 8958 | 0.66 | 0.765604 |
Target: 5'- gGUGcUCGGGCucGACCugucGCUCCGUCGa -3' miRNA: 3'- -CAC-AGUUCGcaCUGGc---UGAGGCAGCg -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 9182 | 0.69 | 0.591891 |
Target: 5'- cGUGUgCGAGC-UGAUCGACgccggggugCCGUaCGCg -3' miRNA: 3'- -CACA-GUUCGcACUGGCUGa--------GGCA-GCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 9655 | 0.67 | 0.691213 |
Target: 5'- cGUGUgGGGCG-GGCUGACguaCCGcgagCGCc -3' miRNA: 3'- -CACAgUUCGCaCUGGCUGa--GGCa---GCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 10042 | 0.71 | 0.474596 |
Target: 5'- cGUGUCGAGaCGgagaACCGACgacgccgaCGUCGCg -3' miRNA: 3'- -CACAGUUC-GCac--UGGCUGag------GCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 13144 | 0.69 | 0.591891 |
Target: 5'- aUGUCc--CG-GACCGACUUgGUCGCc -3' miRNA: 3'- cACAGuucGCaCUGGCUGAGgCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 14581 | 0.66 | 0.734322 |
Target: 5'- cGUGUCGgcacuacacaaGGCG-GAgCGGCUCCGgaUCGa -3' miRNA: 3'- -CACAGU-----------UCGCaCUgGCUGAGGC--AGCg -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 19811 | 0.66 | 0.723671 |
Target: 5'- -aGUCGacggucugcugcAGCucgGUGACCGGCaCgGUCGCg -3' miRNA: 3'- caCAGU------------UCG---CACUGGCUGaGgCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 20566 | 1.12 | 0.000714 |
Target: 5'- gGUGUCAAGCGUGACCGACUCCGUCGCg -3' miRNA: 3'- -CACAGUUCGCACUGGCUGAGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 23896 | 0.68 | 0.64718 |
Target: 5'- -aGUUGAGCagGUGccgcacgagcGCCGACgagCCGUCGUg -3' miRNA: 3'- caCAGUUCG--CAC----------UGGCUGa--GGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 24284 | 0.68 | 0.658236 |
Target: 5'- -gGUCAAGgGUGACCcGGCgugcuuugCC-UCGCu -3' miRNA: 3'- caCAGUUCgCACUGG-CUGa-------GGcAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 24856 | 0.67 | 0.691213 |
Target: 5'- -gGUCccgcGGCGUGACgGACgcgaCCG-CGCu -3' miRNA: 3'- caCAGu---UCGCACUGgCUGa---GGCaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 28546 | 0.71 | 0.474596 |
Target: 5'- --aUCAGuCGUGGCuCGGCUCCG-CGCa -3' miRNA: 3'- cacAGUUcGCACUG-GCUGAGGCaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 28780 | 0.66 | 0.7553 |
Target: 5'- -gGUCAugaGGCGcaUGACgCGuCcCCGUCGCu -3' miRNA: 3'- caCAGU---UCGC--ACUG-GCuGaGGCAGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 32215 | 0.66 | 0.765604 |
Target: 5'- -cGUCGAGCGgccGGCCGuacCUCaugaGcCGCa -3' miRNA: 3'- caCAGUUCGCa--CUGGCu--GAGg---CaGCG- -5' |
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26292 | 3' | -54.4 | NC_005345.2 | + | 32947 | 0.68 | 0.63611 |
Target: 5'- uUGUCGAGCGcgaGGCgGACgCCGgcCGCg -3' miRNA: 3'- cACAGUUCGCa--CUGgCUGaGGCa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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