miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26292 3' -54.4 NC_005345.2 + 24856 0.67 0.691213
Target:  5'- -gGUCccgcGGCGUGACgGACgcgaCCG-CGCu -3'
miRNA:   3'- caCAGu---UCGCACUGgCUGa---GGCaGCG- -5'
26292 3' -54.4 NC_005345.2 + 24284 0.68 0.658236
Target:  5'- -gGUCAAGgGUGACCcGGCgugcuuugCC-UCGCu -3'
miRNA:   3'- caCAGUUCgCACUGG-CUGa-------GGcAGCG- -5'
26292 3' -54.4 NC_005345.2 + 38319 0.68 0.625036
Target:  5'- -gGUCAcacccuGGCgGUGACCG---CCGUCGCg -3'
miRNA:   3'- caCAGU------UCG-CACUGGCugaGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 9182 0.69 0.591891
Target:  5'- cGUGUgCGAGC-UGAUCGACgccggggugCCGUaCGCg -3'
miRNA:   3'- -CACA-GUUCGcACUGGCUGa--------GGCA-GCG- -5'
26292 3' -54.4 NC_005345.2 + 28546 0.71 0.474596
Target:  5'- --aUCAGuCGUGGCuCGGCUCCG-CGCa -3'
miRNA:   3'- cacAGUUcGCACUG-GCUGAGGCaGCG- -5'
26292 3' -54.4 NC_005345.2 + 8700 0.75 0.289674
Target:  5'- cGUGggCGgcccGGCuGUGGCCGACucgUCCGUCGCc -3'
miRNA:   3'- -CACa-GU----UCG-CACUGGCUG---AGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 37589 0.77 0.190466
Target:  5'- cUG-CAGGCGggcGACCGGCUCgCGUUGCg -3'
miRNA:   3'- cACaGUUCGCa--CUGGCUGAG-GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 8958 0.66 0.765604
Target:  5'- gGUGcUCGGGCucGACCugucGCUCCGUCGa -3'
miRNA:   3'- -CAC-AGUUCGcaCUGGc---UGAGGCAGCg -5'
26292 3' -54.4 NC_005345.2 + 37709 0.66 0.744869
Target:  5'- gGUGagAcAGCGUG-CCGAUUCCGg-GCa -3'
miRNA:   3'- -CACagU-UCGCACuGGCUGAGGCagCG- -5'
26292 3' -54.4 NC_005345.2 + 14581 0.66 0.734322
Target:  5'- cGUGUCGgcacuacacaaGGCG-GAgCGGCUCCGgaUCGa -3'
miRNA:   3'- -CACAGU-----------UCGCaCUgGCUGAGGC--AGCg -5'
26292 3' -54.4 NC_005345.2 + 47097 0.66 0.723671
Target:  5'- ---cCAGGUGUGGCCGAUcgugUCCuGUgGCu -3'
miRNA:   3'- cacaGUUCGCACUGGCUG----AGG-CAgCG- -5'
26292 3' -54.4 NC_005345.2 + 1646 0.67 0.702105
Target:  5'- gGUGgCAGGCaggGUGACCGugUUuccagcggCGUCGUa -3'
miRNA:   3'- -CACaGUUCG---CACUGGCugAG--------GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 4651 0.66 0.7553
Target:  5'- -gGgggCAGGCGUGAagaCGACUCac-CGCg -3'
miRNA:   3'- caCa--GUUCGCACUg--GCUGAGgcaGCG- -5'
26292 3' -54.4 NC_005345.2 + 2368 0.67 0.712929
Target:  5'- ---aCGGcGCGUGACCucC-CCGUCGCg -3'
miRNA:   3'- cacaGUU-CGCACUGGcuGaGGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 38971 0.66 0.734322
Target:  5'- -gGUCGAGaucGGCgCGACcaCCGUCGCg -3'
miRNA:   3'- caCAGUUCgcaCUG-GCUGa-GGCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 38024 0.66 0.7553
Target:  5'- gGUGgcc-GCGUGGacgUCGACUCUGUgGCa -3'
miRNA:   3'- -CACaguuCGCACU---GGCUGAGGCAgCG- -5'
26292 3' -54.4 NC_005345.2 + 34632 0.66 0.723671
Target:  5'- -aGUacgGGGCGUGGCUGcugccGCUCggCGUCGCg -3'
miRNA:   3'- caCAg--UUCGCACUGGC-----UGAG--GCAGCG- -5'
26292 3' -54.4 NC_005345.2 + 9655 0.67 0.691213
Target:  5'- cGUGUgGGGCG-GGCUGACguaCCGcgagCGCc -3'
miRNA:   3'- -CACAgUUCGCaCUGGCUGa--GGCa---GCG- -5'
26292 3' -54.4 NC_005345.2 + 38249 0.67 0.669267
Target:  5'- gGUG-CAGGCGUGAUCGAUgaCGU-GCg -3'
miRNA:   3'- -CACaGUUCGCACUGGCUGagGCAgCG- -5'
26292 3' -54.4 NC_005345.2 + 20566 1.12 0.000714
Target:  5'- gGUGUCAAGCGUGACCGACUCCGUCGCg -3'
miRNA:   3'- -CACAGUUCGCACUGGCUGAGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.