miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 3' -54.9 NC_005345.2 + 12177 1.08 0.001088
Target:  5'- uCGACAAGCCGAGGAAAUCAGCGGCCGu -3'
miRNA:   3'- -GCUGUUCGGCUCCUUUAGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 21780 0.79 0.135925
Target:  5'- gGGCGAGCCGGGGucgGGUggacugauucgauggCGGCGGCCGa -3'
miRNA:   3'- gCUGUUCGGCUCCu--UUA---------------GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 33450 0.79 0.138228
Target:  5'- gGAUucGCCGAGGAccugcagcggcaGAUCGGCcGGCCGa -3'
miRNA:   3'- gCUGuuCGGCUCCU------------UUAGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 19750 0.78 0.150286
Target:  5'- gCGACcgAGGCCGAGG----CGGCGGCCGa -3'
miRNA:   3'- -GCUG--UUCGGCUCCuuuaGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 48522 0.77 0.169238
Target:  5'- -cGCAGGCCGAGGAcgcgauccgcaccauGGUCacccgguGGCGGCCGa -3'
miRNA:   3'- gcUGUUCGGCUCCU---------------UUAG-------UCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 32184 0.77 0.18571
Target:  5'- aCGGCAgccGGCCGAGGugccgcaggcgucucGUCgAGCGGCCGg -3'
miRNA:   3'- -GCUGU---UCGGCUCCuu-------------UAG-UCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 19355 0.76 0.207997
Target:  5'- gGGCGAGCgcguagucgucuuCGAGGGAcUCGGCGGUCGu -3'
miRNA:   3'- gCUGUUCG-------------GCUCCUUuAGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 34027 0.75 0.243807
Target:  5'- gGACGggGGCCGGaccguccGGAucgacggcgaGAUCAGCGGCCGc -3'
miRNA:   3'- gCUGU--UCGGCU-------CCU----------UUAGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 10550 0.74 0.271124
Target:  5'- cCGGCGguGGCCGAGGuAAUCc-CGGCCGc -3'
miRNA:   3'- -GCUGU--UCGGCUCCuUUAGucGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 41289 0.74 0.271124
Target:  5'- aCGGCAGGCuguacaccugcgCGAGGGuGAUCAGCuGCCGa -3'
miRNA:   3'- -GCUGUUCG------------GCUCCU-UUAGUCGcCGGC- -5'
26301 3' -54.9 NC_005345.2 + 30231 0.74 0.278149
Target:  5'- cCGACGcgAGCCgcGAGGAcauGAUC-GCGGCCGc -3'
miRNA:   3'- -GCUGU--UCGG--CUCCU---UUAGuCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 18888 0.74 0.292634
Target:  5'- uCGACGAGCCcGGccugcUCGGCGGCCGc -3'
miRNA:   3'- -GCUGUUCGGcUCcuuu-AGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 24434 0.73 0.299342
Target:  5'- gGGCGaggguucGGUCGcGGAGAacUCGGCGGCCGa -3'
miRNA:   3'- gCUGU-------UCGGCuCCUUU--AGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 45553 0.73 0.300095
Target:  5'- gCGACAgcGGCCGAGGucgg-GGCGGgCCGg -3'
miRNA:   3'- -GCUGU--UCGGCUCCuuuagUCGCC-GGC- -5'
26301 3' -54.9 NC_005345.2 + 12203 0.73 0.315455
Target:  5'- aCGACGAG-CGAGGAcucgccgCGGuCGGCCGg -3'
miRNA:   3'- -GCUGUUCgGCUCCUuua----GUC-GCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 46037 0.73 0.318597
Target:  5'- gCGGCcccucgguauguccgGGGcCCGAGGGucGAUCAgGCGGCCGg -3'
miRNA:   3'- -GCUG---------------UUC-GGCUCCU--UUAGU-CGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 36233 0.73 0.323355
Target:  5'- gGuACGGG-CGAGGGAGUaGGCGGCCGu -3'
miRNA:   3'- gC-UGUUCgGCUCCUUUAgUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 30009 0.73 0.331401
Target:  5'- aCGACGucccGGCCGAGGucgccgagcGGAUCGGCgcccacgcgugGGCCGa -3'
miRNA:   3'- -GCUGU----UCGGCUCC---------UUUAGUCG-----------CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 24070 0.73 0.339594
Target:  5'- aCGGCGAGCCGA-----UCGGCcGGCCGu -3'
miRNA:   3'- -GCUGUUCGGCUccuuuAGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 14885 0.72 0.347933
Target:  5'- gCGAguCGGGCCGAGGcggagCAGCGGgCGa -3'
miRNA:   3'- -GCU--GUUCGGCUCCuuua-GUCGCCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.