miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 3' -54.9 NC_005345.2 + 21780 0.79 0.135925
Target:  5'- gGGCGAGCCGGGGucgGGUggacugauucgauggCGGCGGCCGa -3'
miRNA:   3'- gCUGUUCGGCUCCu--UUA---------------GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 27168 0.7 0.468972
Target:  5'- gCGGCGucccGCCgGAGGAGGUCuaccGCcGGCCGu -3'
miRNA:   3'- -GCUGUu---CGG-CUCCUUUAGu---CG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 7301 0.7 0.479167
Target:  5'- aCGAC--GCCGAGGucguccccgauGAGUCGGCGgacGCCGa -3'
miRNA:   3'- -GCUGuuCGGCUCC-----------UUUAGUCGC---CGGC- -5'
26301 3' -54.9 NC_005345.2 + 40603 0.66 0.728978
Target:  5'- cCGGCGAGCaCGGGGuguaccucUCcGCGaGCCGc -3'
miRNA:   3'- -GCUGUUCG-GCUCCuuu-----AGuCGC-CGGC- -5'
26301 3' -54.9 NC_005345.2 + 24434 0.73 0.299342
Target:  5'- gGGCGaggguucGGUCGcGGAGAacUCGGCGGCCGa -3'
miRNA:   3'- gCUGU-------UCGGCuCCUUU--AGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 12203 0.73 0.315455
Target:  5'- aCGACGAG-CGAGGAcucgccgCGGuCGGCCGg -3'
miRNA:   3'- -GCUGUUCgGCUCCUuua----GUC-GCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 24070 0.73 0.339594
Target:  5'- aCGGCGAGCCGA-----UCGGCcGGCCGu -3'
miRNA:   3'- -GCUGUUCGGCUccuuuAGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 14885 0.72 0.347933
Target:  5'- gCGAguCGGGCCGAGGcggagCAGCGGgCGa -3'
miRNA:   3'- -GCU--GUUCGGCUCCuuua-GUCGCCgGC- -5'
26301 3' -54.9 NC_005345.2 + 31147 0.71 0.40469
Target:  5'- cCGACAGGCgGucgaggccucgacacGGGAGAUCGaggccGCGGCCc -3'
miRNA:   3'- -GCUGUUCGgC---------------UCCUUUAGU-----CGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 25842 0.7 0.45889
Target:  5'- cCGACGcGGaCCGAGGAcaaCGGCcGGCCGu -3'
miRNA:   3'- -GCUGU-UC-GGCUCCUuuaGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 35211 0.71 0.429358
Target:  5'- gGGCGcuaucuGGCUGuGGAAGUCGGCGcucaaGCCGg -3'
miRNA:   3'- gCUGU------UCGGCuCCUUUAGUCGC-----CGGC- -5'
26301 3' -54.9 NC_005345.2 + 25401 0.72 0.365045
Target:  5'- cCGGCcucgccgucgAGGCCGAGGAAAUgGGCGGg-- -3'
miRNA:   3'- -GCUG----------UUCGGCUCCUUUAgUCGCCggc -5'
26301 3' -54.9 NC_005345.2 + 33450 0.79 0.138228
Target:  5'- gGAUucGCCGAGGAccugcagcggcaGAUCGGCcGGCCGa -3'
miRNA:   3'- gCUGuuCGGCUCCU------------UUAGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 41470 0.7 0.45889
Target:  5'- cCGGCGGGCUGcgcuGGggGcuccccuucaCAGCGGCCGc -3'
miRNA:   3'- -GCUGUUCGGCu---CCuuUa---------GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 19750 0.78 0.150286
Target:  5'- gCGACcgAGGCCGAGG----CGGCGGCCGa -3'
miRNA:   3'- -GCUG--UUCGGCUCCuuuaGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 23942 0.72 0.351309
Target:  5'- uGACcGGCCGGGGGugauUCAccgcgggcugcugucGCGGCCGc -3'
miRNA:   3'- gCUGuUCGGCUCCUuu--AGU---------------CGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 47814 0.7 0.45889
Target:  5'- uCGACAGcGCCucgcccugGAGGAcccgCAGCGGCUGc -3'
miRNA:   3'- -GCUGUU-CGG--------CUCCUuua-GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5206 0.7 0.468972
Target:  5'- cCGGCAcGGCCGGGcAGcUC-GCGGCCGg -3'
miRNA:   3'- -GCUGU-UCGGCUCcUUuAGuCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 30231 0.74 0.278149
Target:  5'- cCGACGcgAGCCgcGAGGAcauGAUC-GCGGCCGc -3'
miRNA:   3'- -GCUGU--UCGG--CUCCU---UUAGuCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 30009 0.73 0.331401
Target:  5'- aCGACGucccGGCCGAGGucgccgagcGGAUCGGCgcccacgcgugGGCCGa -3'
miRNA:   3'- -GCUGU----UCGGCUCC---------UUUAGUCG-----------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.