miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 3' -54.9 NC_005345.2 + 1 0.67 0.641424
Target:  5'- -cGCAGGUC-AGGGAGUCAaCGGCCc -3'
miRNA:   3'- gcUGUUCGGcUCCUUUAGUcGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 2902 0.72 0.373817
Target:  5'- uCGACGAGCgGAucggcGGAccgggCAGCGGCCc -3'
miRNA:   3'- -GCUGUUCGgCU-----CCUuua--GUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 3162 0.69 0.520967
Target:  5'- uCGGCGAGCucguCGGGGugccGGGUCGGCGaGCCc -3'
miRNA:   3'- -GCUGUUCG----GCUCC----UUUAGUCGC-CGGc -5'
26301 3' -54.9 NC_005345.2 + 3817 0.66 0.707448
Target:  5'- gCGACGacGGUCGuccgcuGcGAGGUCGGCGGCg- -3'
miRNA:   3'- -GCUGU--UCGGCu-----C-CUUUAGUCGCCGgc -5'
26301 3' -54.9 NC_005345.2 + 4334 0.69 0.531644
Target:  5'- uCGACAucGGCCGAGccGggGUCcugccucgGGCGGgCGg -3'
miRNA:   3'- -GCUGU--UCGGCUC--CuuUAG--------UCGCCgGC- -5'
26301 3' -54.9 NC_005345.2 + 4458 0.68 0.608148
Target:  5'- aGGCuccGGCgGGGGcc--CGGCGGCCGu -3'
miRNA:   3'- gCUGu--UCGgCUCCuuuaGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 4513 0.69 0.520967
Target:  5'- -aGCAGGUCGAGGAcguaugacGUCAGUaGCCGg -3'
miRNA:   3'- gcUGUUCGGCUCCUu-------UAGUCGcCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5141 0.69 0.553225
Target:  5'- cCGGCGAuCagGAGGAAcgcgccgCGGCGGCCGa -3'
miRNA:   3'- -GCUGUUcGg-CUCCUUua-----GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5181 0.7 0.489469
Target:  5'- gGGCGAGCCGccGGGcugcacgcAUCGGCacGGCCGg -3'
miRNA:   3'- gCUGUUCGGC--UCCuu------UAGUCG--CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5206 0.7 0.468972
Target:  5'- cCGGCAcGGCCGGGcAGcUC-GCGGCCGg -3'
miRNA:   3'- -GCUGU-UCGGCUCcUUuAGuCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5465 0.69 0.510375
Target:  5'- gGGCGGuGCCGAGugaccgacccGAAAUgGGCGGUCGc -3'
miRNA:   3'- gCUGUU-CGGCUC----------CUUUAgUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 5760 0.68 0.586053
Target:  5'- gGACugcGCCGAGGcgGUCcGCaGGUCGg -3'
miRNA:   3'- gCUGuu-CGGCUCCuuUAGuCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 6105 0.7 0.468972
Target:  5'- uCGACGAGCCGcgcguAGGu-----GCGGCCGc -3'
miRNA:   3'- -GCUGUUCGGC-----UCCuuuaguCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 6602 0.67 0.663581
Target:  5'- gCGaACGAGCUGuGGAccggCGGCGGuuGc -3'
miRNA:   3'- -GC-UGUUCGGCuCCUuua-GUCGCCggC- -5'
26301 3' -54.9 NC_005345.2 + 7037 0.67 0.641424
Target:  5'- uCGACcGGCCGGcGAucgaGGCGGCCc -3'
miRNA:   3'- -GCUGuUCGGCUcCUuuagUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 7237 0.72 0.373817
Target:  5'- uGAuCAuGCCGGGGAccggGGCGGCCGa -3'
miRNA:   3'- gCU-GUuCGGCUCCUuuagUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 7301 0.7 0.479167
Target:  5'- aCGAC--GCCGAGGucguccccgauGAGUCGGCGgacGCCGa -3'
miRNA:   3'- -GCUGuuCGGCUCC-----------UUUAGUCGC---CGGC- -5'
26301 3' -54.9 NC_005345.2 + 7364 0.66 0.707448
Target:  5'- uGGCGcAGCCGGGcGGG---GGUGGCCGc -3'
miRNA:   3'- gCUGU-UCGGCUC-CUUuagUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 8373 0.71 0.419765
Target:  5'- uCGGCGAGgUGuGGAAccgcggcCGGCGGCCGa -3'
miRNA:   3'- -GCUGUUCgGCuCCUUua-----GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 8398 0.66 0.717179
Target:  5'- cCGACGAGCCGcuGccGGUCGacggggcGCGGCUGg -3'
miRNA:   3'- -GCUGUUCGGCucCu-UUAGU-------CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.