miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 25503 0.71 0.116394
Target:  5'- uUCUGGCUGCUGCgUCUCG-GCCGgcGGc -3'
miRNA:   3'- -AGGCCGGCGGCGgAGGGCuCGGCa-CC- -5'
26301 5' -65.7 NC_005345.2 + 24194 0.7 0.128858
Target:  5'- aCCGGCCGCCcgucgggGCCgagUUCGAGUCGcGGc -3'
miRNA:   3'- aGGCCGGCGG-------CGGa--GGGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 21589 0.7 0.129193
Target:  5'- cCCGGCCGCCGgggUCCgaCGAGCCGa-- -3'
miRNA:   3'- aGGCCGGCGGCgg-AGG--GCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 34776 0.7 0.132591
Target:  5'- aCCGGCCgGUCGCCgagcugCgCCGGGUCGcGGu -3'
miRNA:   3'- aGGCCGG-CGGCGGa-----G-GGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 22027 0.7 0.13607
Target:  5'- gCCGGCCgguGCCGCCguggCgCCGAGCaUGUcGGc -3'
miRNA:   3'- aGGCCGG---CGGCGGa---G-GGCUCG-GCA-CC- -5'
26301 5' -65.7 NC_005345.2 + 4642 0.7 0.13607
Target:  5'- aUCCgGGCCGUCGCCUgCUGugccucGGCCGUc- -3'
miRNA:   3'- -AGG-CCGGCGGCGGAgGGC------UCGGCAcc -5'
26301 5' -65.7 NC_005345.2 + 8926 0.7 0.13607
Target:  5'- aUCaCGGCgGCCGCC-CCCGugggcgGGCUGcGGg -3'
miRNA:   3'- -AG-GCCGgCGGCGGaGGGC------UCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 8122 0.7 0.139273
Target:  5'- cCCGGCCGCCGUcgucgacggCUCuuGGccgcugcGCCcGUGGg -3'
miRNA:   3'- aGGCCGGCGGCG---------GAGggCU-------CGG-CACC- -5'
26301 5' -65.7 NC_005345.2 + 5728 0.69 0.143282
Target:  5'- gCCaGGCCgGCCGUgUUCCGGGCCGc-- -3'
miRNA:   3'- aGG-CCGG-CGGCGgAGGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 27146 0.69 0.146264
Target:  5'- cCCGGCaUGCCGCCgugcggcagcggCCCGAGCaGUaccGGg -3'
miRNA:   3'- aGGCCG-GCGGCGGa-----------GGGCUCGgCA---CC- -5'
26301 5' -65.7 NC_005345.2 + 11742 0.69 0.147018
Target:  5'- uUUCGGCuCGCCGCCUUcgUCGGGCuCGguuUGGc -3'
miRNA:   3'- -AGGCCG-GCGGCGGAG--GGCUCG-GC---ACC- -5'
26301 5' -65.7 NC_005345.2 + 17842 0.69 0.150842
Target:  5'- cCCGGCCGCCggGCCccggcgacaUCCCc--CCGUGGc -3'
miRNA:   3'- aGGCCGGCGG--CGG---------AGGGcucGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 10570 0.69 0.150842
Target:  5'- cCCGGCCGCgagCGCCacguaCgCCGuGCCgGUGGg -3'
miRNA:   3'- aGGCCGGCG---GCGGa----G-GGCuCGG-CACC- -5'
26301 5' -65.7 NC_005345.2 + 15631 0.69 0.154361
Target:  5'- -gCGGCuCGCCGCCUgCCCGGacugcucGCCGa-- -3'
miRNA:   3'- agGCCG-GCGGCGGA-GGGCU-------CGGCacc -5'
26301 5' -65.7 NC_005345.2 + 37014 0.69 0.154361
Target:  5'- cUCGGCaUGCCGCCUUUcagcggcaccgggCGAGCCG-GGa -3'
miRNA:   3'- aGGCCG-GCGGCGGAGG-------------GCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 37653 0.69 0.158358
Target:  5'- gUCCGGCgucggugcggGCCGCCUgcgcggcCCUGAugucgucgGCCGUGGg -3'
miRNA:   3'- -AGGCCGg---------CGGCGGA-------GGGCU--------CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 43750 0.69 0.158763
Target:  5'- cUCGGCCGaCCGCCgggCCUGAGUgGa-- -3'
miRNA:   3'- aGGCCGGC-GGCGGa--GGGCUCGgCacc -5'
26301 5' -65.7 NC_005345.2 + 25864 0.69 0.160391
Target:  5'- gCCGGCCGUCGCCgcUgaucacgauggagcaCCCGAGCgaGUGc -3'
miRNA:   3'- aGGCCGGCGGCGG--A---------------GGGCUCGg-CACc -5'
26301 5' -65.7 NC_005345.2 + 39552 0.68 0.167057
Target:  5'- aCCGGCCccGCgGCCggUCCCG-GCCGg-- -3'
miRNA:   3'- aGGCCGG--CGgCGG--AGGGCuCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 25290 0.68 0.171349
Target:  5'- --gGGCuCGCCGUCgUCCCG-GCCGggcUGGg -3'
miRNA:   3'- aggCCG-GCGGCGG-AGGGCuCGGC---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.