miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 12213 1.08 0.00012
Target:  5'- gUCCGGCCGCCGCCUCCCGAGCCGUGGc -3'
miRNA:   3'- -AGGCCGGCGGCGGAGGGCUCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 45501 0.79 0.024281
Target:  5'- cCCGGCCGCUGCCg-CCGGGCUGcGGa -3'
miRNA:   3'- aGGCCGGCGGCGGagGGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 17953 0.77 0.039779
Target:  5'- gUCCGGCguccgcucgGCCGCCUgCCGGGCCGcGGc -3'
miRNA:   3'- -AGGCCGg--------CGGCGGAgGGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 19031 0.77 0.04088
Target:  5'- cUCgGGCCGCugcucCGCCUCgCCGcccuGGCCGUGGu -3'
miRNA:   3'- -AGgCCGGCG-----GCGGAG-GGC----UCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 20402 0.76 0.046846
Target:  5'- gCCGGCCccGCCGuaCCUCCC--GCCGUGGg -3'
miRNA:   3'- aGGCCGG--CGGC--GGAGGGcuCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 44897 0.76 0.046846
Target:  5'- gCCGGUguuCGCCGgCagCCCGAGCCGUGa -3'
miRNA:   3'- aGGCCG---GCGGCgGa-GGGCUCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 4473 0.75 0.053514
Target:  5'- cCCGGCgGCCGUgUCCggcucgaCGAGCCGUGc -3'
miRNA:   3'- aGGCCGgCGGCGgAGG-------GCUCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 45738 0.74 0.06277
Target:  5'- gCCGcGcCCGCCGCCUcucucagCCCGAacucgccGCCGUGGc -3'
miRNA:   3'- aGGC-C-GGCGGCGGA-------GGGCU-------CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 43938 0.74 0.06311
Target:  5'- gCCGGCCGCgaGCUgCCCG-GCCGUGc -3'
miRNA:   3'- aGGCCGGCGg-CGGaGGGCuCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 43997 0.73 0.074159
Target:  5'- gUCGGCCGCCGCggcgcguucCUCCUGAucGCCG-GGu -3'
miRNA:   3'- aGGCCGGCGGCG---------GAGGGCU--CGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 19768 0.73 0.078239
Target:  5'- -gCGGCCgaGCCGUacgacaCCGAGCCGUGGc -3'
miRNA:   3'- agGCCGG--CGGCGgag---GGCUCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 19014 0.73 0.080144
Target:  5'- -gCGGCgccucgaCGUCGCCgCCCGAGCCGUcGGu -3'
miRNA:   3'- agGCCG-------GCGGCGGaGGGCUCGGCA-CC- -5'
26301 5' -65.7 NC_005345.2 + 42101 0.72 0.084763
Target:  5'- gUCCGGCCggGCCGCCUCgaucgCCG-GCCGg-- -3'
miRNA:   3'- -AGGCCGG--CGGCGGAG-----GGCuCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 13158 0.72 0.091804
Target:  5'- cUUGGUCGCCGUCUCCCacaugcGGCCG-GGg -3'
miRNA:   3'- aGGCCGGCGGCGGAGGGc-----UCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 3693 0.71 0.104785
Target:  5'- cCCGGCCGCCGUCUC---GGCCGccGGc -3'
miRNA:   3'- aGGCCGGCGGCGGAGggcUCGGCa-CC- -5'
26301 5' -65.7 NC_005345.2 + 2142 0.71 0.10958
Target:  5'- -gCGGCUGCUGCCUCgcuugCCGAGCuuccacgcguugacCGUGGc -3'
miRNA:   3'- agGCCGGCGGCGGAG-----GGCUCG--------------GCACC- -5'
26301 5' -65.7 NC_005345.2 + 6469 0.71 0.110157
Target:  5'- gCgGGCCGCCGagCUguacggcggcgagCCCGAGgCGUGGa -3'
miRNA:   3'- aGgCCGGCGGCg-GA-------------GGGCUCgGCACC- -5'
26301 5' -65.7 NC_005345.2 + 28818 0.71 0.113384
Target:  5'- gUCCGcaCCGCgCGCCUgCCCaucGCCGUGGa -3'
miRNA:   3'- -AGGCc-GGCG-GCGGA-GGGcu-CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 22373 0.71 0.113384
Target:  5'- gCCGGCCacgauCCGCCgcaCCCGcGCCG-GGg -3'
miRNA:   3'- aGGCCGGc----GGCGGa--GGGCuCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 3023 0.71 0.11609
Target:  5'- uUCCgaGGCCGCCGCUUcgacCCCGAcagggucGCCGcgUGGa -3'
miRNA:   3'- -AGG--CCGGCGGCGGA----GGGCU-------CGGC--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.