miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 1123 0.68 0.19431
Target:  5'- -aCaGCCGCguaGCCUCCCcgGAGCC-UGGg -3'
miRNA:   3'- agGcCGGCGg--CGGAGGG--CUCGGcACC- -5'
26301 5' -65.7 NC_005345.2 + 1336 0.67 0.214576
Target:  5'- gCCGGCCGggucgcgguaaCgCGCCUgCCaCGAGCCGg-- -3'
miRNA:   3'- aGGCCGGC-----------G-GCGGA-GG-GCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 2142 0.71 0.10958
Target:  5'- -gCGGCUGCUGCCUCgcuugCCGAGCuuccacgcguugacCGUGGc -3'
miRNA:   3'- agGCCGGCGGCGGAG-----GGCUCG--------------GCACC- -5'
26301 5' -65.7 NC_005345.2 + 2782 0.66 0.248352
Target:  5'- gCUcGCCGCCGCCcuUCgUGAGCCGc-- -3'
miRNA:   3'- aGGcCGGCGGCGG--AGgGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 3023 0.71 0.11609
Target:  5'- uUCCgaGGCCGCCGCUUcgacCCCGAcagggucGCCGcgUGGa -3'
miRNA:   3'- -AGG--CCGGCGGCGGA----GGGCU-------CGGC--ACC- -5'
26301 5' -65.7 NC_005345.2 + 3088 0.67 0.199214
Target:  5'- cCCGGCCGCCugaucgaCC-CUCGGGCCccGGa -3'
miRNA:   3'- aGGCCGGCGGc------GGaGGGCUCGGcaCC- -5'
26301 5' -65.7 NC_005345.2 + 3693 0.71 0.104785
Target:  5'- cCCGGCCGCCGUCUC---GGCCGccGGc -3'
miRNA:   3'- aGGCCGGCGGCGGAGggcUCGGCa-CC- -5'
26301 5' -65.7 NC_005345.2 + 3951 0.66 0.266831
Target:  5'- -gCGGCCGgCaGCCUCUCGGGCgGc-- -3'
miRNA:   3'- agGCCGGCgG-CGGAGGGCUCGgCacc -5'
26301 5' -65.7 NC_005345.2 + 4473 0.75 0.053514
Target:  5'- cCCGGCgGCCGUgUCCggcucgaCGAGCCGUGc -3'
miRNA:   3'- aGGCCGgCGGCGgAGG-------GCUCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 4642 0.7 0.13607
Target:  5'- aUCCgGGCCGUCGCCUgCUGugccucGGCCGUc- -3'
miRNA:   3'- -AGG-CCGGCGGCGGAgGGC------UCGGCAcc -5'
26301 5' -65.7 NC_005345.2 + 5728 0.69 0.143282
Target:  5'- gCCaGGCCgGCCGUgUUCCGGGCCGc-- -3'
miRNA:   3'- aGG-CCGG-CGGCGgAGGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 5797 0.66 0.248352
Target:  5'- cCCGGCCGaCC-CCgaggUCGAGCCGUa- -3'
miRNA:   3'- aGGCCGGC-GGcGGag--GGCUCGGCAcc -5'
26301 5' -65.7 NC_005345.2 + 6469 0.71 0.110157
Target:  5'- gCgGGCCGCCGagCUguacggcggcgagCCCGAGgCGUGGa -3'
miRNA:   3'- aGgCCGGCGGCg-GA-------------GGGCUCgGCACC- -5'
26301 5' -65.7 NC_005345.2 + 6666 0.67 0.225374
Target:  5'- cCCGGaaGCCuugccuguGCCUCgCCGAGCaCGgcgagGGg -3'
miRNA:   3'- aGGCCggCGG--------CGGAG-GGCUCG-GCa----CC- -5'
26301 5' -65.7 NC_005345.2 + 7795 0.67 0.199214
Target:  5'- gCCGaGCgcugCGCCGCCgCCgGAcGCCGUGa -3'
miRNA:   3'- aGGC-CG----GCGGCGGaGGgCU-CGGCACc -5'
26301 5' -65.7 NC_005345.2 + 8122 0.7 0.139273
Target:  5'- cCCGGCCGCCGUcgucgacggCUCuuGGccgcugcGCCcGUGGg -3'
miRNA:   3'- aGGCCGGCGGCG---------GAGggCU-------CGG-CACC- -5'
26301 5' -65.7 NC_005345.2 + 8384 0.66 0.23663
Target:  5'- gCCGGCCGaCCgGCCcgaCGAGCCGcUGc -3'
miRNA:   3'- aGGCCGGC-GG-CGGaggGCUCGGC-ACc -5'
26301 5' -65.7 NC_005345.2 + 8926 0.7 0.13607
Target:  5'- aUCaCGGCgGCCGCC-CCCGugggcgGGCUGcGGg -3'
miRNA:   3'- -AG-GCCGgCGGCGGaGGGC------UCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 9424 0.66 0.248352
Target:  5'- aCCGGCUGUCaaaggugucgugGCCcgagcucgUCCCGGGCgGUGu -3'
miRNA:   3'- aGGCCGGCGG------------CGG--------AGGGCUCGgCACc -5'
26301 5' -65.7 NC_005345.2 + 10570 0.69 0.150842
Target:  5'- cCCGGCCGCgagCGCCacguaCgCCGuGCCgGUGGg -3'
miRNA:   3'- aGGCCGGCG---GCGGa----G-GGCuCGG-CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.