miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 45501 0.79 0.024281
Target:  5'- cCCGGCCGCUGCCg-CCGGGCUGcGGa -3'
miRNA:   3'- aGGCCGGCGGCGGagGGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 39552 0.68 0.167057
Target:  5'- aCCGGCCccGCgGCCggUCCCG-GCCGg-- -3'
miRNA:   3'- aGGCCGG--CGgCGG--AGGGCuCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 46416 0.68 0.171349
Target:  5'- gCgGGCCGCUGUCaUCgCCGGGCgGgcgGGa -3'
miRNA:   3'- aGgCCGGCGGCGG-AG-GGCUCGgCa--CC- -5'
26301 5' -65.7 NC_005345.2 + 12028 0.66 0.266831
Target:  5'- cCCGGCUacgugGCC-CCUgCCGAGCUGg-- -3'
miRNA:   3'- aGGCCGG-----CGGcGGAgGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 45738 0.74 0.06277
Target:  5'- gCCGcGcCCGCCGCCUcucucagCCCGAacucgccGCCGUGGc -3'
miRNA:   3'- aGGC-C-GGCGGCGGA-------GGGCU-------CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 43997 0.73 0.074159
Target:  5'- gUCGGCCGCCGCggcgcguucCUCCUGAucGCCG-GGu -3'
miRNA:   3'- aGGCCGGCGGCG---------GAGGGCU--CGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 3693 0.71 0.104785
Target:  5'- cCCGGCCGCCGUCUC---GGCCGccGGc -3'
miRNA:   3'- aGGCCGGCGGCGGAGggcUCGGCa-CC- -5'
26301 5' -65.7 NC_005345.2 + 2142 0.71 0.10958
Target:  5'- -gCGGCUGCUGCCUCgcuugCCGAGCuuccacgcguugacCGUGGc -3'
miRNA:   3'- agGCCGGCGGCGGAG-----GGCUCG--------------GCACC- -5'
26301 5' -65.7 NC_005345.2 + 3023 0.71 0.11609
Target:  5'- uUCCgaGGCCGCCGCUUcgacCCCGAcagggucGCCGcgUGGa -3'
miRNA:   3'- -AGG--CCGGCGGCGGA----GGGCU-------CGGC--ACC- -5'
26301 5' -65.7 NC_005345.2 + 25864 0.69 0.160391
Target:  5'- gCCGGCCGUCGCCgcUgaucacgauggagcaCCCGAGCgaGUGc -3'
miRNA:   3'- aGGCCGGCGGCGG--A---------------GGGCUCGg-CACc -5'
26301 5' -65.7 NC_005345.2 + 8926 0.7 0.13607
Target:  5'- aUCaCGGCgGCCGCC-CCCGugggcgGGCUGcGGg -3'
miRNA:   3'- -AG-GCCGgCGGCGGaGGGC------UCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 28818 0.71 0.113384
Target:  5'- gUCCGcaCCGCgCGCCUgCCCaucGCCGUGGa -3'
miRNA:   3'- -AGGCc-GGCG-GCGGA-GGGcu-CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 19031 0.77 0.04088
Target:  5'- cUCgGGCCGCugcucCGCCUCgCCGcccuGGCCGUGGu -3'
miRNA:   3'- -AGgCCGGCG-----GCGGAG-GGC----UCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 8122 0.7 0.139273
Target:  5'- cCCGGCCGCCGUcgucgacggCUCuuGGccgcugcGCCcGUGGg -3'
miRNA:   3'- aGGCCGGCGGCG---------GAGggCU-------CGG-CACC- -5'
26301 5' -65.7 NC_005345.2 + 20402 0.76 0.046846
Target:  5'- gCCGGCCccGCCGuaCCUCCC--GCCGUGGg -3'
miRNA:   3'- aGGCCGG--CGGC--GGAGGGcuCGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 6469 0.71 0.110157
Target:  5'- gCgGGCCGCCGagCUguacggcggcgagCCCGAGgCGUGGa -3'
miRNA:   3'- aGgCCGGCGGCg-GA-------------GGGCUCgGCACC- -5'
26301 5' -65.7 NC_005345.2 + 17842 0.69 0.150842
Target:  5'- cCCGGCCGCCggGCCccggcgacaUCCCc--CCGUGGc -3'
miRNA:   3'- aGGCCGGCGG--CGG---------AGGGcucGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 16944 0.68 0.171349
Target:  5'- gCCGGCCGCucgacgagaCGCCUCggcaccucggCCGGcuGCCGUGc -3'
miRNA:   3'- aGGCCGGCG---------GCGGAG----------GGCU--CGGCACc -5'
26301 5' -65.7 NC_005345.2 + 44897 0.76 0.046846
Target:  5'- gCCGGUguuCGCCGgCagCCCGAGCCGUGa -3'
miRNA:   3'- aGGCCG---GCGGCgGa-GGGCUCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 19768 0.73 0.078239
Target:  5'- -gCGGCCgaGCCGUacgacaCCGAGCCGUGGc -3'
miRNA:   3'- agGCCGG--CGGCGgag---GGCUCGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.