miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 38547 0.66 0.266831
Target:  5'- aCCGGCCgcGCCGCUgCUCGuGCCa--- -3'
miRNA:   3'- aGGCCGG--CGGCGGaGGGCuCGGcacc -5'
26301 5' -65.7 NC_005345.2 + 33040 0.66 0.242432
Target:  5'- gCCGGCCGCUGCUcacauggCgCGAGCucggCGUGu -3'
miRNA:   3'- aGGCCGGCGGCGGa------GgGCUCG----GCACc -5'
26301 5' -65.7 NC_005345.2 + 2782 0.66 0.248352
Target:  5'- gCUcGCCGCCGCCcuUCgUGAGCCGc-- -3'
miRNA:   3'- aGGcCGGCGGCGG--AGgGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 12028 0.66 0.266831
Target:  5'- cCCGGCUacgugGCC-CCUgCCGAGCUGg-- -3'
miRNA:   3'- aGGCCGG-----CGGcGGAgGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 11925 0.66 0.230944
Target:  5'- -aCGGCaCGCCGCCgacaCgCGAgggcgaacgGCUGUGGa -3'
miRNA:   3'- agGCCG-GCGGCGGa---GgGCU---------CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 13657 0.66 0.236056
Target:  5'- gCCGacgagcaGCgCGCCGCC-CUCGAcGCCGUcGGg -3'
miRNA:   3'- aGGC-------CG-GCGGCGGaGGGCU-CGGCA-CC- -5'
26301 5' -65.7 NC_005345.2 + 25380 0.66 0.241846
Target:  5'- gCCGgcucgacgcgaucGCCGCCgGCCUCgCCGucgaGGCCGaGGa -3'
miRNA:   3'- aGGC-------------CGGCGG-CGGAG-GGC----UCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 15642 0.66 0.242432
Target:  5'- aCCGGUCgggGCCGCaaugcgaCCGGGCCcgGUGGu -3'
miRNA:   3'- aGGCCGG---CGGCGgag----GGCUCGG--CACC- -5'
26301 5' -65.7 NC_005345.2 + 8384 0.66 0.23663
Target:  5'- gCCGGCCGaCCgGCCcgaCGAGCCGcUGc -3'
miRNA:   3'- aGGCCGGC-GG-CGGaggGCUCGGC-ACc -5'
26301 5' -65.7 NC_005345.2 + 21995 0.66 0.230944
Target:  5'- cUCgGGCCGCUGCCgcacggcggcaUgCCGGGCCcgccGGa -3'
miRNA:   3'- -AGgCCGGCGGCGG-----------AgGGCUCGGca--CC- -5'
26301 5' -65.7 NC_005345.2 + 25552 0.66 0.230944
Target:  5'- gCCGGCgucgcgccgaaCGCCGCgaCCCGcAGCCGc-- -3'
miRNA:   3'- aGGCCG-----------GCGGCGgaGGGC-UCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 40234 0.66 0.230944
Target:  5'- -gCGGCCGCCGUgaUCCuggCGAGCgG-GGa -3'
miRNA:   3'- agGCCGGCGGCGg-AGG---GCUCGgCaCC- -5'
26301 5' -65.7 NC_005345.2 + 3951 0.66 0.266831
Target:  5'- -gCGGCCGgCaGCCUCUCGGGCgGc-- -3'
miRNA:   3'- agGCCGGCgG-CGGAGGGCUCGgCacc -5'
26301 5' -65.7 NC_005345.2 + 32224 0.66 0.260551
Target:  5'- gCCGGCCGUa-CCUCauGAGCCGcagcGGc -3'
miRNA:   3'- aGGCCGGCGgcGGAGggCUCGGCa---CC- -5'
26301 5' -65.7 NC_005345.2 + 16325 0.66 0.266831
Target:  5'- cUCGGCCcaCUGCUUCCCGAGUgccuCGcGGa -3'
miRNA:   3'- aGGCCGGc-GGCGGAGGGCUCG----GCaCC- -5'
26301 5' -65.7 NC_005345.2 + 44956 0.66 0.254392
Target:  5'- gCCGcGCCGCCugcacgGCCUgCCGccCCGUGa -3'
miRNA:   3'- aGGC-CGGCGG------CGGAgGGCucGGCACc -5'
26301 5' -65.7 NC_005345.2 + 15460 0.66 0.253782
Target:  5'- cCCGaGCCGCuuCGCCUgcuucgggucgagCCCGAGCUGc-- -3'
miRNA:   3'- aGGC-CGGCG--GCGGA-------------GGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 38359 0.66 0.248352
Target:  5'- gCCGGuCCGCCuGCCgcagcgcggcugUCUCGAcgGCCGgcagGGg -3'
miRNA:   3'- aGGCC-GGCGG-CGG------------AGGGCU--CGGCa---CC- -5'
26301 5' -65.7 NC_005345.2 + 27382 0.66 0.23663
Target:  5'- cCCGGCuCGCCcgccagcgagcaGCacaggggccCUCCCGGGCCGg-- -3'
miRNA:   3'- aGGCCG-GCGG------------CG---------GAGGGCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 12660 0.66 0.234912
Target:  5'- gUCGGCCGCCGUUggcguaCCCGccgggucgguuguaGGCCGaGGc -3'
miRNA:   3'- aGGCCGGCGGCGGa-----GGGC--------------UCGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.