miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 44619 0.68 0.248524
Target:  5'- cCGGGUCGUGCCCcucgucgaGGCAgaccggagcgaUCC-C-GGUCg -3'
miRNA:   3'- -GCCCAGCGCGGG--------CCGU-----------AGGuGuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 29140 0.68 0.248524
Target:  5'- uCGucUCGUGCCCGGCAgcCCGCcuGUCg -3'
miRNA:   3'- -GCccAGCGCGGGCCGUa-GGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 2042 0.68 0.25477
Target:  5'- gCGGGcccggCGCgGCCCGGCGggCCGCGGcGa- -3'
miRNA:   3'- -GCCCa----GCG-CGGGCCGUa-GGUGUC-Cag -5'
26319 3' -62.1 NC_005345.2 + 37716 0.68 0.267648
Target:  5'- gCGGGaUCGCGCUgCGGCGcggcgCCGgCuGGUCg -3'
miRNA:   3'- -GCCC-AGCGCGG-GCCGUa----GGU-GuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18983 0.68 0.274282
Target:  5'- uGGGUCGcCGCuggCCGGCGggacgaccUCgACGGGUg -3'
miRNA:   3'- gCCCAGC-GCG---GGCCGU--------AGgUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 43499 0.68 0.274282
Target:  5'- cCGGGcC-CGCCgGGCGgugCCGauCGGGUCg -3'
miRNA:   3'- -GCCCaGcGCGGgCCGUa--GGU--GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 33477 0.67 0.281047
Target:  5'- -aGGUCGgGCCCGGUGUgucaCCACcgggcccGGUCg -3'
miRNA:   3'- gcCCAGCgCGGGCCGUA----GGUGu------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 42874 0.67 0.287943
Target:  5'- -cGGUCGgugaCGCCCGGCGcCCACGGa-- -3'
miRNA:   3'- gcCCAGC----GCGGGCCGUaGGUGUCcag -5'
26319 3' -62.1 NC_005345.2 + 39543 0.67 0.287943
Target:  5'- -aGGUCGUGCaCCGGCc-CCGCGgccGGUCc -3'
miRNA:   3'- gcCCAGCGCG-GGCCGuaGGUGU---CCAG- -5'
26319 3' -62.1 NC_005345.2 + 23672 0.67 0.294972
Target:  5'- aGGGUCGCGgCCGGUcgg-GCGGGcCg -3'
miRNA:   3'- gCCCAGCGCgGGCCGuaggUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 21576 0.67 0.302134
Target:  5'- -cGGUaauccgGCGCCCGGCcgCCG-GGGUCc -3'
miRNA:   3'- gcCCAg-----CGCGGGCCGuaGGUgUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 40884 0.67 0.305036
Target:  5'- aGGGcacUCGUGaaccccgcgcucgaaCCCGGCgaGUCCuGCGGGUCg -3'
miRNA:   3'- gCCC---AGCGC---------------GGGCCG--UAGG-UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 22312 0.67 0.307227
Target:  5'- aGGuGUCGCgGUCCGGUucggGUCUgcacgugugggggcGCGGGUCg -3'
miRNA:   3'- gCC-CAGCG-CGGGCCG----UAGG--------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 27034 0.67 0.309429
Target:  5'- uCGGGUCGUGCCggucguugUGGCca-CGCAGG-Cg -3'
miRNA:   3'- -GCCCAGCGCGG--------GCCGuagGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 33317 0.67 0.309429
Target:  5'- gCGGGccCGCGCCCauc-UCCACGcGGUCg -3'
miRNA:   3'- -GCCCa-GCGCGGGccguAGGUGU-CCAG- -5'
26319 3' -62.1 NC_005345.2 + 23570 0.67 0.316858
Target:  5'- -cGGcCGCGUCCGaGCugcggCUGCGGGUCg -3'
miRNA:   3'- gcCCaGCGCGGGC-CGua---GGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 31221 0.66 0.32442
Target:  5'- cCGGGUgCG-GCCgGGUGUaCgGCGGGUCc -3'
miRNA:   3'- -GCCCA-GCgCGGgCCGUA-GgUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 1189 0.66 0.32442
Target:  5'- aCGGG-CG-GCUCGGCAguccggcCCGCGGGcCa -3'
miRNA:   3'- -GCCCaGCgCGGGCCGUa------GGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 21027 0.66 0.33134
Target:  5'- cCGGGUgcguuccucggcaCGCGCgCCGGCGaCCGCcucGUCg -3'
miRNA:   3'- -GCCCA-------------GCGCG-GGCCGUaGGUGuc-CAG- -5'
26319 3' -62.1 NC_005345.2 + 8497 0.66 0.332116
Target:  5'- -aGGaCGUGUUCGGCGUCCACuGG-Ca -3'
miRNA:   3'- gcCCaGCGCGGGCCGUAGGUGuCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.