miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 6458 1.09 0.000185
Target:  5'- cCGGGUCGCGCCCGGCAUCCACAGGUCa -3'
miRNA:   3'- -GCCCAGCGCGGGCCGUAGGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 6623 0.76 0.071165
Target:  5'- gGcGGUUGCGCCCGGCGgugCgACGGcGUCa -3'
miRNA:   3'- gC-CCAGCGCGGGCCGUa--GgUGUC-CAG- -5'
26319 3' -62.1 NC_005345.2 + 18566 0.75 0.086352
Target:  5'- cCGGGUgCGCGCCCaGCGUcgggaacaCCGcCGGGUCg -3'
miRNA:   3'- -GCCCA-GCGCGGGcCGUA--------GGU-GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 30689 0.74 0.093766
Target:  5'- uCGGGUCGCGggaCCCGGUccaCCACGGG-Cg -3'
miRNA:   3'- -GCCCAGCGC---GGGCCGua-GGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 5745 0.72 0.126073
Target:  5'- cCGGGcCgcagccgaggacuGCGCCgaGGCgGUCCGCAGGUCg -3'
miRNA:   3'- -GCCCaG-------------CGCGGg-CCG-UAGGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 944 0.72 0.133383
Target:  5'- uCGaGGUCGCGCacuaggugcuccCCGaGCAggaaCCGCGGGUCa -3'
miRNA:   3'- -GC-CCAGCGCG------------GGC-CGUa---GGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18653 0.72 0.140706
Target:  5'- gCGGGUCGCuGUCCGGCAgccucaCCGaagaGGGUg -3'
miRNA:   3'- -GCCCAGCG-CGGGCCGUa-----GGUg---UCCAg -5'
26319 3' -62.1 NC_005345.2 + 15480 0.71 0.148396
Target:  5'- uCGGGUCGaGCCCGaGCugcgCCGCAaGUCg -3'
miRNA:   3'- -GCCCAGCgCGGGC-CGua--GGUGUcCAG- -5'
26319 3' -62.1 NC_005345.2 + 17556 0.71 0.173806
Target:  5'- gCGGGcCGCgccgagcaggGCCCGGCAgagCUgcauCAGGUCg -3'
miRNA:   3'- -GCCCaGCG----------CGGGCCGUa--GGu---GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18393 0.7 0.185016
Target:  5'- uCGGucGUCGUGCCCGGCGUCucgaccUcgacgacgugcggcaGCAGGUCc -3'
miRNA:   3'- -GCC--CAGCGCGGGCCGUAG------G---------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 24288 0.7 0.192839
Target:  5'- gCGcGGUCGCGUCCGuCAcgCCGCGGGa- -3'
miRNA:   3'- -GC-CCAGCGCGGGCcGUa-GGUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 31116 0.7 0.192839
Target:  5'- aCGuGGcCGCguuccugcgcucGCCCGGCGUCCgACAGG-Cg -3'
miRNA:   3'- -GC-CCaGCG------------CGGGCCGUAGG-UGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 46237 0.7 0.192839
Target:  5'- uGGGcCGCuGCCCGGUccgccgAUCCGCucGUCg -3'
miRNA:   3'- gCCCaGCG-CGGGCCG------UAGGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 3596 0.69 0.212046
Target:  5'- gCGGGUCGUcgGCCCacaggugaccccacGGCccgcgCCGCAGGUg -3'
miRNA:   3'- -GCCCAGCG--CGGG--------------CCGua---GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 30684 0.69 0.213674
Target:  5'- uGGGUCGaCGaUCCGGCcggCUGCGGGUg -3'
miRNA:   3'- gCCCAGC-GC-GGGCCGua-GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 22515 0.69 0.219176
Target:  5'- aCGGGUCGCccgGCCgGGCGcccgaCACGGGa- -3'
miRNA:   3'- -GCCCAGCG---CGGgCCGUag---GUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 5355 0.69 0.224799
Target:  5'- uGGGcgCGCuGCCCGGCgAUCUcCAGGa- -3'
miRNA:   3'- gCCCa-GCG-CGGGCCG-UAGGuGUCCag -5'
26319 3' -62.1 NC_005345.2 + 20524 0.69 0.23582
Target:  5'- cCGGGaUCGgccugcggcgacaCGCCCGGCAUgCGCGauucggugugcGGUCg -3'
miRNA:   3'- -GCCC-AGC-------------GCGGGCCGUAgGUGU-----------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 3484 0.69 0.236412
Target:  5'- cCGGGU-GCacuGCCCGGUcgUCGCAGG-Cg -3'
miRNA:   3'- -GCCCAgCG---CGGGCCGuaGGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 12650 0.68 0.2418
Target:  5'- cCGGGgCGCGgUCGGCcgCCGuuggcguacccgcCGGGUCg -3'
miRNA:   3'- -GCCCaGCGCgGGCCGuaGGU-------------GUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.