Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26319 | 3' | -62.1 | NC_005345.2 | + | 944 | 0.72 | 0.133383 |
Target: 5'- uCGaGGUCGCGCacuaggugcuccCCGaGCAggaaCCGCGGGUCa -3' miRNA: 3'- -GC-CCAGCGCG------------GGC-CGUa---GGUGUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 1189 | 0.66 | 0.32442 |
Target: 5'- aCGGG-CG-GCUCGGCAguccggcCCGCGGGcCa -3' miRNA: 3'- -GCCCaGCgCGGGCCGUa------GGUGUCCaG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 2042 | 0.68 | 0.25477 |
Target: 5'- gCGGGcccggCGCgGCCCGGCGggCCGCGGcGa- -3' miRNA: 3'- -GCCCa----GCG-CGGGCCGUa-GGUGUC-Cag -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 3484 | 0.69 | 0.236412 |
Target: 5'- cCGGGU-GCacuGCCCGGUcgUCGCAGG-Cg -3' miRNA: 3'- -GCCCAgCG---CGGGCCGuaGGUGUCCaG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 3596 | 0.69 | 0.212046 |
Target: 5'- gCGGGUCGUcgGCCCacaggugaccccacGGCccgcgCCGCAGGUg -3' miRNA: 3'- -GCCCAGCG--CGGG--------------CCGua---GGUGUCCAg -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 4775 | 0.66 | 0.339945 |
Target: 5'- uGGGccCGUGCCUuuccgGGCucgCCGCGGGUg -3' miRNA: 3'- gCCCa-GCGCGGG-----CCGua-GGUGUCCAg -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 5355 | 0.69 | 0.224799 |
Target: 5'- uGGGcgCGCuGCCCGGCgAUCUcCAGGa- -3' miRNA: 3'- gCCCa-GCG-CGGGCCG-UAGGuGUCCag -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 5745 | 0.72 | 0.126073 |
Target: 5'- cCGGGcCgcagccgaggacuGCGCCgaGGCgGUCCGCAGGUCg -3' miRNA: 3'- -GCCCaG-------------CGCGGg-CCG-UAGGUGUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 6458 | 1.09 | 0.000185 |
Target: 5'- cCGGGUCGCGCCCGGCAUCCACAGGUCa -3' miRNA: 3'- -GCCCAGCGCGGGCCGUAGGUGUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 6623 | 0.76 | 0.071165 |
Target: 5'- gGcGGUUGCGCCCGGCGgugCgACGGcGUCa -3' miRNA: 3'- gC-CCAGCGCGGGCCGUa--GgUGUC-CAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 8497 | 0.66 | 0.332116 |
Target: 5'- -aGGaCGUGUUCGGCGUCCACuGG-Ca -3' miRNA: 3'- gcCCaGCGCGGGCCGUAGGUGuCCaG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 9949 | 0.66 | 0.372583 |
Target: 5'- -cGGUCGCcaacccgcgGCCCGGguUCgggCugGGGUCc -3' miRNA: 3'- gcCCAGCG---------CGGGCCguAG---GugUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 11134 | 0.66 | 0.339945 |
Target: 5'- aCGGGcUUGUGCCgGGg--CCGguGGUCa -3' miRNA: 3'- -GCCC-AGCGCGGgCCguaGGUguCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 12650 | 0.68 | 0.2418 |
Target: 5'- cCGGGgCGCGgUCGGCcgCCGuuggcguacccgcCGGGUCg -3' miRNA: 3'- -GCCCaGCGCgGGCCGuaGGU-------------GUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 15480 | 0.71 | 0.148396 |
Target: 5'- uCGGGUCGaGCCCGaGCugcgCCGCAaGUCg -3' miRNA: 3'- -GCCCAGCgCGGGC-CGua--GGUGUcCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 16189 | 0.66 | 0.364227 |
Target: 5'- aCGcGGaCGCGgCCGGCGUCCGCc--UCg -3' miRNA: 3'- -GC-CCaGCGCgGGCCGUAGGUGuccAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 17372 | 0.66 | 0.339156 |
Target: 5'- uCGGGcUCGUaCUCGGUgccguccgcggugGUCCGCGGGUa -3' miRNA: 3'- -GCCC-AGCGcGGGCCG-------------UAGGUGUCCAg -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 17556 | 0.71 | 0.173806 |
Target: 5'- gCGGGcCGCgccgagcaggGCCCGGCAgagCUgcauCAGGUCg -3' miRNA: 3'- -GCCCaGCG----------CGGGCCGUa--GGu---GUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 18393 | 0.7 | 0.185016 |
Target: 5'- uCGGucGUCGUGCCCGGCGUCucgaccUcgacgacgugcggcaGCAGGUCc -3' miRNA: 3'- -GCC--CAGCGCGGGCCGUAG------G---------------UGUCCAG- -5' |
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26319 | 3' | -62.1 | NC_005345.2 | + | 18566 | 0.75 | 0.086352 |
Target: 5'- cCGGGUgCGCGCCCaGCGUcgggaacaCCGcCGGGUCg -3' miRNA: 3'- -GCCCA-GCGCGGGcCGUA--------GGU-GUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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