miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 6623 0.76 0.071165
Target:  5'- gGcGGUUGCGCCCGGCGgugCgACGGcGUCa -3'
miRNA:   3'- gC-CCAGCGCGGGCCGUa--GgUGUC-CAG- -5'
26319 3' -62.1 NC_005345.2 + 23570 0.67 0.316858
Target:  5'- -cGGcCGCGUCCGaGCugcggCUGCGGGUCg -3'
miRNA:   3'- gcCCaGCGCGGGC-CGua---GGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 11134 0.66 0.339945
Target:  5'- aCGGGcUUGUGCCgGGg--CCGguGGUCa -3'
miRNA:   3'- -GCCC-AGCGCGGgCCguaGGUguCCAG- -5'
26319 3' -62.1 NC_005345.2 + 36378 0.66 0.372583
Target:  5'- gCGGG-CGCGCUCcGCggCCGCGGcGUg -3'
miRNA:   3'- -GCCCaGCGCGGGcCGuaGGUGUC-CAg -5'
26319 3' -62.1 NC_005345.2 + 31116 0.7 0.192839
Target:  5'- aCGuGGcCGCguuccugcgcucGCCCGGCGUCCgACAGG-Cg -3'
miRNA:   3'- -GC-CCaGCG------------CGGGCCGUAGG-UGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 30684 0.69 0.213674
Target:  5'- uGGGUCGaCGaUCCGGCcggCUGCGGGUg -3'
miRNA:   3'- gCCCAGC-GC-GGGCCGua-GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 20524 0.69 0.23582
Target:  5'- cCGGGaUCGgccugcggcgacaCGCCCGGCAUgCGCGauucggugugcGGUCg -3'
miRNA:   3'- -GCCC-AGC-------------GCGGGCCGUAgGUGU-----------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 3484 0.69 0.236412
Target:  5'- cCGGGU-GCacuGCCCGGUcgUCGCAGG-Cg -3'
miRNA:   3'- -GCCCAgCG---CGGGCCGuaGGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 39543 0.67 0.287943
Target:  5'- -aGGUCGUGCaCCGGCc-CCGCGgccGGUCc -3'
miRNA:   3'- gcCCAGCGCG-GGCCGuaGGUGU---CCAG- -5'
26319 3' -62.1 NC_005345.2 + 33317 0.67 0.309429
Target:  5'- gCGGGccCGCGCCCauc-UCCACGcGGUCg -3'
miRNA:   3'- -GCCCa-GCGCGGGccguAGGUGU-CCAG- -5'
26319 3' -62.1 NC_005345.2 + 40884 0.67 0.305036
Target:  5'- aGGGcacUCGUGaaccccgcgcucgaaCCCGGCgaGUCCuGCGGGUCg -3'
miRNA:   3'- gCCC---AGCGC---------------GGGCCG--UAGG-UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18983 0.68 0.274282
Target:  5'- uGGGUCGcCGCuggCCGGCGggacgaccUCgACGGGUg -3'
miRNA:   3'- gCCCAGC-GCG---GGCCGU--------AGgUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 18566 0.75 0.086352
Target:  5'- cCGGGUgCGCGCCCaGCGUcgggaacaCCGcCGGGUCg -3'
miRNA:   3'- -GCCCA-GCGCGGGcCGUA--------GGU-GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 22312 0.67 0.307227
Target:  5'- aGGuGUCGCgGUCCGGUucggGUCUgcacgugugggggcGCGGGUCg -3'
miRNA:   3'- gCC-CAGCG-CGGGCCG----UAGG--------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18653 0.72 0.140706
Target:  5'- gCGGGUCGCuGUCCGGCAgccucaCCGaagaGGGUg -3'
miRNA:   3'- -GCCCAGCG-CGGGCCGUa-----GGUg---UCCAg -5'
26319 3' -62.1 NC_005345.2 + 2042 0.68 0.25477
Target:  5'- gCGGGcccggCGCgGCCCGGCGggCCGCGGcGa- -3'
miRNA:   3'- -GCCCa----GCG-CGGGCCGUa-GGUGUC-Cag -5'
26319 3' -62.1 NC_005345.2 + 27034 0.67 0.309429
Target:  5'- uCGGGUCGUGCCggucguugUGGCca-CGCAGG-Cg -3'
miRNA:   3'- -GCCCAGCGCGG--------GCCGuagGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 8497 0.66 0.332116
Target:  5'- -aGGaCGUGUUCGGCGUCCACuGG-Ca -3'
miRNA:   3'- gcCCaGCGCGGGCCGUAGGUGuCCaG- -5'
26319 3' -62.1 NC_005345.2 + 46237 0.7 0.192839
Target:  5'- uGGGcCGCuGCCCGGUccgccgAUCCGCucGUCg -3'
miRNA:   3'- gCCCaGCG-CGGGCCG------UAGGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 22515 0.69 0.219176
Target:  5'- aCGGGUCGCccgGCCgGGCGcccgaCACGGGa- -3'
miRNA:   3'- -GCCCAGCG---CGGgCCGUag---GUGUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.