Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26319 | 5' | -53.9 | NC_005345.2 | + | 46231 | 0.66 | 0.779523 |
Target: 5'- --aGCCguggUCAGGAGCGGCGcGAAUCCg -3' miRNA: 3'- cucCGGa---GGUCUUUGUUGC-CUUGGGg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 45207 | 0.66 | 0.727043 |
Target: 5'- aGAGGCUgCCGGccGCGGCGaGcACCUCg -3' miRNA: 3'- -CUCCGGaGGUCuuUGUUGC-CuUGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 44598 | 0.66 | 0.779523 |
Target: 5'- aGAGGacgucaUCgAGGAGCGGCGGcAGCgCCg -3' miRNA: 3'- -CUCCgg----AGgUCUUUGUUGCC-UUGgGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 37293 | 0.66 | 0.758922 |
Target: 5'- aGGGGuuCCUuaCCGGGcugcucucacAGCAGCGGGACCUg -3' miRNA: 3'- -CUCC--GGA--GGUCU----------UUGUUGCCUUGGGg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 42847 | 0.66 | 0.748414 |
Target: 5'- -cGGCCggaacccggCCGGGAugAAgGcGGCCCCg -3' miRNA: 3'- cuCCGGa--------GGUCUUugUUgCcUUGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 39944 | 0.66 | 0.748414 |
Target: 5'- gGAGGCUgugauguaUCCGGcAACAGCGcGAuuCCUCg -3' miRNA: 3'- -CUCCGG--------AGGUCuUUGUUGC-CUu-GGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 31180 | 0.66 | 0.727043 |
Target: 5'- cGAGGCCgcggcCCGGcAGGCGGCcGAGCCg- -3' miRNA: 3'- -CUCCGGa----GGUC-UUUGUUGcCUUGGgg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 42672 | 0.66 | 0.776471 |
Target: 5'- gGAGGCCUCCcgugccugaccuguGGAuGCcgGGCGcGACCCg -3' miRNA: 3'- -CUCCGGAGG--------------UCUuUG--UUGCcUUGGGg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 35631 | 0.66 | 0.748414 |
Target: 5'- -cGGUC-CCAGAAcacgauCGACGGGugCUCg -3' miRNA: 3'- cuCCGGaGGUCUUu-----GUUGCCUugGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 16890 | 0.66 | 0.758922 |
Target: 5'- --cGCCUUCGGAAccuugaccgugcGCGugGuGACCCCg -3' miRNA: 3'- cucCGGAGGUCUU------------UGUugCcUUGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 2536 | 0.66 | 0.748414 |
Target: 5'- gGGGGUUUCCAcgcgguGGCGACGGcgaGugCCCg -3' miRNA: 3'- -CUCCGGAGGUcu----UUGUUGCC---UugGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 8003 | 0.66 | 0.748414 |
Target: 5'- -cGGUCUgcaCAGugGCGAgccgccaguCGGAGCCCCg -3' miRNA: 3'- cuCCGGAg--GUCuuUGUU---------GCCUUGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 5944 | 0.66 | 0.77749 |
Target: 5'- -uGGUCguucUCAGGGACAGCGGcguggggaaaccACCCCg -3' miRNA: 3'- cuCCGGa---GGUCUUUGUUGCCu-----------UGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 32821 | 0.67 | 0.70528 |
Target: 5'- cGAGGCaCUCgGGAAGCAGUGG-GCCg- -3' miRNA: 3'- -CUCCG-GAGgUCUUUGUUGCCuUGGgg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 8769 | 0.67 | 0.683221 |
Target: 5'- gGAGGCUgCgCAGGAugAGCGcGGugaucGCCCCc -3' miRNA: 3'- -CUCCGGaG-GUCUUugUUGC-CU-----UGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 48361 | 0.67 | 0.715116 |
Target: 5'- -cGGUCUCCGguggggcGAGGCGACGGcGCUgCg -3' miRNA: 3'- cuCCGGAGGU-------CUUUGUUGCCuUGGgG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 28122 | 0.67 | 0.683221 |
Target: 5'- gGGGGuCCUCuCGGcgGCGAgGGGguaugcgaaaGCCCCu -3' miRNA: 3'- -CUCC-GGAG-GUCuuUGUUgCCU----------UGGGG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 37872 | 0.67 | 0.672109 |
Target: 5'- cGAGGCUcaggcCCGGAcggucGCGGCGGuGCCCg -3' miRNA: 3'- -CUCCGGa----GGUCUu----UGUUGCCuUGGGg -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 14983 | 0.68 | 0.627385 |
Target: 5'- cGGGGCC-CCGGGccACuccuCGGGGCCgCCg -3' miRNA: 3'- -CUCCGGaGGUCUu-UGuu--GCCUUGG-GG- -5' |
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26319 | 5' | -53.9 | NC_005345.2 | + | 3575 | 0.68 | 0.627385 |
Target: 5'- -cGGCCcCCGGccGCAAcCGGcccGCCCCg -3' miRNA: 3'- cuCCGGaGGUCuuUGUU-GCCu--UGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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