miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 5' -53.9 NC_005345.2 + 6492 1.12 0.000682
Target:  5'- gGAGGCCUCCAGAAACAACGGAACCCCg -3'
miRNA:   3'- -CUCCGGAGGUCUUUGUUGCCUUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 28636 0.83 0.080393
Target:  5'- cAGGCCgaUCCcGggGCAGCGGAaaGCCCCg -3'
miRNA:   3'- cUCCGG--AGGuCuuUGUUGCCU--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 14506 0.76 0.253271
Target:  5'- -cGGCCgagaCCGGGAGCAGCGcaccGCCCCg -3'
miRNA:   3'- cuCCGGa---GGUCUUUGUUGCcu--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 13940 0.75 0.259983
Target:  5'- -cGGCCgCCuGAAcaGCAACGGGgcGCCCCu -3'
miRNA:   3'- cuCCGGaGGuCUU--UGUUGCCU--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 34131 0.73 0.369425
Target:  5'- cGGGGUggCCAGAGaucgaguggcGCGGCGGcGGCCCCg -3'
miRNA:   3'- -CUCCGgaGGUCUU----------UGUUGCC-UUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 17706 0.72 0.387421
Target:  5'- -cGGCCUC----GGCGACGGGACCCg -3'
miRNA:   3'- cuCCGGAGgucuUUGUUGCCUUGGGg -5'
26319 5' -53.9 NC_005345.2 + 11146 0.72 0.396632
Target:  5'- cGGGGCCgguggUCaAGAuguACGGCGGcACCCCg -3'
miRNA:   3'- -CUCCGGa----GG-UCUu--UGUUGCCuUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 49104 0.72 0.405984
Target:  5'- -uGGCaUCCGGGuacGACAACGGccCCCCg -3'
miRNA:   3'- cuCCGgAGGUCU---UUGUUGCCuuGGGG- -5'
26319 5' -53.9 NC_005345.2 + 643 0.7 0.50544
Target:  5'- -cGGCCUgCGGcguGAGCGggaccguGCGGAACCCg -3'
miRNA:   3'- cuCCGGAgGUC---UUUGU-------UGCCUUGGGg -5'
26319 5' -53.9 NC_005345.2 + 47127 0.7 0.506501
Target:  5'- cAGGCCggcCCcGGAGCAGCGGAGCg-- -3'
miRNA:   3'- cUCCGGa--GGuCUUUGUUGCCUUGggg -5'
26319 5' -53.9 NC_005345.2 + 46090 0.69 0.560611
Target:  5'- cGGGGCCUgCGcGGACAuccacGCGGcGACCCUg -3'
miRNA:   3'- -CUCCGGAgGUcUUUGU-----UGCC-UUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 44045 0.69 0.571642
Target:  5'- gGAGGgCaUCGGGAugccgcgcucGCGGCGGAACUCCu -3'
miRNA:   3'- -CUCCgGaGGUCUU----------UGUUGCCUUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 7648 0.69 0.571642
Target:  5'- cGAGGCgUgCGGcaGAGCGGCcgcugugaaggGGAGCCCCc -3'
miRNA:   3'- -CUCCGgAgGUC--UUUGUUG-----------CCUUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 43861 0.69 0.582724
Target:  5'- cGGGGCgucggCCGGGAcuccGCGGCGGAGCgcguCCCg -3'
miRNA:   3'- -CUCCGga---GGUCUU----UGUUGCCUUG----GGG- -5'
26319 5' -53.9 NC_005345.2 + 3109 0.69 0.605006
Target:  5'- cGGGCC-CCGGAcauacCGAgGGGccGCCCCg -3'
miRNA:   3'- cUCCGGaGGUCUuu---GUUgCCU--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 14602 0.68 0.616188
Target:  5'- gGAGcGgCUCCGGAu-CGACGGGuacGCCCg -3'
miRNA:   3'- -CUC-CgGAGGUCUuuGUUGCCU---UGGGg -5'
26319 5' -53.9 NC_005345.2 + 3575 0.68 0.627385
Target:  5'- -cGGCCcCCGGccGCAAcCGGcccGCCCCg -3'
miRNA:   3'- cuCCGGaGGUCuuUGUU-GCCu--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 14983 0.68 0.627385
Target:  5'- cGGGGCC-CCGGGccACuccuCGGGGCCgCCg -3'
miRNA:   3'- -CUCCGGaGGUCUu-UGuu--GCCUUGG-GG- -5'
26319 5' -53.9 NC_005345.2 + 25866 0.68 0.649781
Target:  5'- -cGGCCgucgCCGcuGAucACGAUGGAGCaCCCg -3'
miRNA:   3'- cuCCGGa---GGU--CUu-UGUUGCCUUG-GGG- -5'
26319 5' -53.9 NC_005345.2 + 46014 0.68 0.649781
Target:  5'- cGGGGUcgCUCCGGucg-GACGGGgcgGCCCCu -3'
miRNA:   3'- -CUCCG--GAGGUCuuugUUGCCU---UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.