miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 5' -53.9 NC_005345.2 + 49104 0.72 0.405984
Target:  5'- -uGGCaUCCGGGuacGACAACGGccCCCCg -3'
miRNA:   3'- cuCCGgAGGUCU---UUGUUGCCuuGGGG- -5'
26319 5' -53.9 NC_005345.2 + 39944 0.66 0.748414
Target:  5'- gGAGGCUgugauguaUCCGGcAACAGCGcGAuuCCUCg -3'
miRNA:   3'- -CUCCGG--------AGGUCuUUGUUGC-CUu-GGGG- -5'
26319 5' -53.9 NC_005345.2 + 37293 0.66 0.758922
Target:  5'- aGGGGuuCCUuaCCGGGcugcucucacAGCAGCGGGACCUg -3'
miRNA:   3'- -CUCC--GGA--GGUCU----------UUGUUGCCUUGGGg -5'
26319 5' -53.9 NC_005345.2 + 44598 0.66 0.779523
Target:  5'- aGAGGacgucaUCgAGGAGCGGCGGcAGCgCCg -3'
miRNA:   3'- -CUCCgg----AGgUCUUUGUUGCC-UUGgGG- -5'
26319 5' -53.9 NC_005345.2 + 14602 0.68 0.616188
Target:  5'- gGAGcGgCUCCGGAu-CGACGGGuacGCCCg -3'
miRNA:   3'- -CUC-CgGAGGUCUuuGUUGCCU---UGGGg -5'
26319 5' -53.9 NC_005345.2 + 3575 0.68 0.627385
Target:  5'- -cGGCCcCCGGccGCAAcCGGcccGCCCCg -3'
miRNA:   3'- cuCCGGaGGUCuuUGUU-GCCu--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 25866 0.68 0.649781
Target:  5'- -cGGCCgucgCCGcuGAucACGAUGGAGCaCCCg -3'
miRNA:   3'- cuCCGGa---GGU--CUu-UGUUGCCUUG-GGG- -5'
26319 5' -53.9 NC_005345.2 + 14506 0.76 0.253271
Target:  5'- -cGGCCgagaCCGGGAGCAGCGcaccGCCCCg -3'
miRNA:   3'- cuCCGGa---GGUCUUUGUUGCcu--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 13940 0.75 0.259983
Target:  5'- -cGGCCgCCuGAAcaGCAACGGGgcGCCCCu -3'
miRNA:   3'- cuCCGGaGGuCUU--UGUUGCCU--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 45207 0.66 0.727043
Target:  5'- aGAGGCUgCCGGccGCGGCGaGcACCUCg -3'
miRNA:   3'- -CUCCGGaGGUCuuUGUUGC-CuUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 32821 0.67 0.70528
Target:  5'- cGAGGCaCUCgGGAAGCAGUGG-GCCg- -3'
miRNA:   3'- -CUCCG-GAGgUCUUUGUUGCCuUGGgg -5'
26319 5' -53.9 NC_005345.2 + 643 0.7 0.50544
Target:  5'- -cGGCCUgCGGcguGAGCGggaccguGCGGAACCCg -3'
miRNA:   3'- cuCCGGAgGUC---UUUGU-------UGCCUUGGGg -5'
26319 5' -53.9 NC_005345.2 + 31180 0.66 0.727043
Target:  5'- cGAGGCCgcggcCCGGcAGGCGGCcGAGCCg- -3'
miRNA:   3'- -CUCCGGa----GGUC-UUUGUUGcCUUGGgg -5'
26319 5' -53.9 NC_005345.2 + 47127 0.7 0.506501
Target:  5'- cAGGCCggcCCcGGAGCAGCGGAGCg-- -3'
miRNA:   3'- cUCCGGa--GGuCUUUGUUGCCUUGggg -5'
26319 5' -53.9 NC_005345.2 + 37872 0.67 0.672109
Target:  5'- cGAGGCUcaggcCCGGAcggucGCGGCGGuGCCCg -3'
miRNA:   3'- -CUCCGGa----GGUCUu----UGUUGCCuUGGGg -5'
26319 5' -53.9 NC_005345.2 + 42847 0.66 0.748414
Target:  5'- -cGGCCggaacccggCCGGGAugAAgGcGGCCCCg -3'
miRNA:   3'- cuCCGGa--------GGUCUUugUUgCcUUGGGG- -5'
26319 5' -53.9 NC_005345.2 + 42672 0.66 0.776471
Target:  5'- gGAGGCCUCCcgugccugaccuguGGAuGCcgGGCGcGACCCg -3'
miRNA:   3'- -CUCCGGAGG--------------UCUuUG--UUGCcUUGGGg -5'
26319 5' -53.9 NC_005345.2 + 3109 0.69 0.605006
Target:  5'- cGGGCC-CCGGAcauacCGAgGGGccGCCCCg -3'
miRNA:   3'- cUCCGGaGGUCUuu---GUUgCCU--UGGGG- -5'
26319 5' -53.9 NC_005345.2 + 14983 0.68 0.627385
Target:  5'- cGGGGCC-CCGGGccACuccuCGGGGCCgCCg -3'
miRNA:   3'- -CUCCGGaGGUCUu-UGuu--GCCUUGG-GG- -5'
26319 5' -53.9 NC_005345.2 + 11146 0.72 0.396632
Target:  5'- cGGGGCCgguggUCaAGAuguACGGCGGcACCCCg -3'
miRNA:   3'- -CUCCGGa----GG-UCUu--UGUUGCCuUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.