miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 5' -58.8 NC_005345.2 + 5049 1.1 0.00027
Target:  5'- gGCGCAGGCUGCAGACCGCUGUGAGCAg -3'
miRNA:   3'- -CGCGUCCGACGUCUGGCGACACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 27779 0.77 0.087703
Target:  5'- cGCGCAccGGcCUGCAGGCCGUgaUGUGGcGCAa -3'
miRNA:   3'- -CGCGU--CC-GACGUCUGGCG--ACACU-CGU- -5'
26320 5' -58.8 NC_005345.2 + 46395 0.75 0.126262
Target:  5'- cGCGCGuGGCgcgcuccacaUGCGGGCCGCUGUcaucgccGGGCGg -3'
miRNA:   3'- -CGCGU-CCG----------ACGUCUGGCGACA-------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 16395 0.74 0.137637
Target:  5'- uCGUcGGCUcGUAcACCGCUGUGAGCAa -3'
miRNA:   3'- cGCGuCCGA-CGUcUGGCGACACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 9690 0.73 0.157978
Target:  5'- gGCuGCAGGCcgaucaGCGGGCCGCcgcGUGAGCc -3'
miRNA:   3'- -CG-CGUCCGa-----CGUCUGGCGa--CACUCGu -5'
26320 5' -58.8 NC_005345.2 + 11597 0.73 0.166851
Target:  5'- cGCGguGGCgugggGCGG-CCGCUGgcggGAGUg -3'
miRNA:   3'- -CGCguCCGa----CGUCuGGCGACa---CUCGu -5'
26320 5' -58.8 NC_005345.2 + 23963 0.73 0.171452
Target:  5'- cCGCGGGCUGCugucgcGGCCGCgagGcugGGGCAa -3'
miRNA:   3'- cGCGUCCGACGu-----CUGGCGa--Ca--CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 32897 0.71 0.206938
Target:  5'- cCGCAGGCUGgGGG-CGCUGcGGGCc -3'
miRNA:   3'- cGCGUCCGACgUCUgGCGACaCUCGu -5'
26320 5' -58.8 NC_005345.2 + 7365 0.71 0.218184
Target:  5'- gGCGCagccGGGCgggGguGGCCGCUGaUGuGGCAu -3'
miRNA:   3'- -CGCG----UCCGa--CguCUGGCGAC-AC-UCGU- -5'
26320 5' -58.8 NC_005345.2 + 37508 0.71 0.218184
Target:  5'- gGCGCGGGCUGCGG--CGCgGUGcGCu -3'
miRNA:   3'- -CGCGUCCGACGUCugGCGaCACuCGu -5'
26320 5' -58.8 NC_005345.2 + 19129 0.71 0.224001
Target:  5'- aUGguGGCUGCGGGCCGCaUG-GcGCGc -3'
miRNA:   3'- cGCguCCGACGUCUGGCG-ACaCuCGU- -5'
26320 5' -58.8 NC_005345.2 + 36333 0.71 0.236031
Target:  5'- gGCGCAGGCgaaccgGCGGGCCGagcGgcucGGGCGg -3'
miRNA:   3'- -CGCGUCCGa-----CGUCUGGCga-Ca---CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 45200 0.7 0.242246
Target:  5'- cCGCccgagAGGCUGCcGGCCGCgGcGAGCAc -3'
miRNA:   3'- cGCG-----UCCGACGuCUGGCGaCaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 20334 0.7 0.274686
Target:  5'- uGgGCAGGCgcgcggUGCGGACCuugccguGC-GUGAGCAu -3'
miRNA:   3'- -CgCGUCCG------ACGUCUGG-------CGaCACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 12442 0.69 0.303674
Target:  5'- cGCGCGGGCUaccucgcGCAGcUCGCg--GGGCAg -3'
miRNA:   3'- -CGCGUCCGA-------CGUCuGGCGacaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 37965 0.69 0.304428
Target:  5'- gGCGUcgaccAGGCUGCGGACCuGCgccgGGGUg -3'
miRNA:   3'- -CGCG-----UCCGACGUCUGG-CGaca-CUCGu -5'
26320 5' -58.8 NC_005345.2 + 35957 0.69 0.312048
Target:  5'- cGCGCGGGCUGCcgcucGGGCCggucaucgGUUGUccuuccgccGAGCGg -3'
miRNA:   3'- -CGCGUCCGACG-----UCUGG--------CGACA---------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 47112 0.69 0.312048
Target:  5'- cGUGUccuguGGCUGCAGGCCgGCcccgGAGCAg -3'
miRNA:   3'- -CGCGu----CCGACGUCUGG-CGaca-CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 37573 0.69 0.319811
Target:  5'- -gGCGGGCgcagGCGGGCUGCagGcGGGCGa -3'
miRNA:   3'- cgCGUCCGa---CGUCUGGCGa-CaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 19090 0.69 0.319811
Target:  5'- cGUGCGGGCcgUGCcguGGCUGaUGUGGGCGc -3'
miRNA:   3'- -CGCGUCCG--ACGu--CUGGCgACACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.