miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 5' -58.8 NC_005345.2 + 11597 0.73 0.166851
Target:  5'- cGCGguGGCgugggGCGG-CCGCUGgcggGAGUg -3'
miRNA:   3'- -CGCguCCGa----CGUCuGGCGACa---CUCGu -5'
26320 5' -58.8 NC_005345.2 + 14904 0.68 0.369401
Target:  5'- aGCaGCGGGCgaaGCGGGCCGCggcgcGGCGg -3'
miRNA:   3'- -CG-CGUCCGa--CGUCUGGCGacac-UCGU- -5'
26320 5' -58.8 NC_005345.2 + 9161 0.67 0.378162
Target:  5'- gGCGCGGGUgcaCGGGCCGgUcGUGuGCGa -3'
miRNA:   3'- -CGCGUCCGac-GUCUGGCgA-CACuCGU- -5'
26320 5' -58.8 NC_005345.2 + 15702 0.66 0.462979
Target:  5'- cCGCAGGUggugacacaccuUGCGGGCCGCccgccacccugcUGUGAaCAg -3'
miRNA:   3'- cGCGUCCG------------ACGUCUGGCG------------ACACUcGU- -5'
26320 5' -58.8 NC_005345.2 + 45200 0.7 0.242246
Target:  5'- cCGCccgagAGGCUGCcGGCCGCgGcGAGCAc -3'
miRNA:   3'- cGCG-----UCCGACGuCUGGCGaCaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 12442 0.69 0.303674
Target:  5'- cGCGCGGGCUaccucgcGCAGcUCGCg--GGGCAg -3'
miRNA:   3'- -CGCGUCCGA-------CGUCuGGCGacaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 27779 0.77 0.087703
Target:  5'- cGCGCAccGGcCUGCAGGCCGUgaUGUGGcGCAa -3'
miRNA:   3'- -CGCGU--CC-GACGUCUGGCG--ACACU-CGU- -5'
26320 5' -58.8 NC_005345.2 + 46395 0.75 0.126262
Target:  5'- cGCGCGuGGCgcgcuccacaUGCGGGCCGCUGUcaucgccGGGCGg -3'
miRNA:   3'- -CGCGU-CCG----------ACGUCUGGCGACA-------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 16395 0.74 0.137637
Target:  5'- uCGUcGGCUcGUAcACCGCUGUGAGCAa -3'
miRNA:   3'- cGCGuCCGA-CGUcUGGCGACACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 46317 0.68 0.368533
Target:  5'- aGCGCAcGCUGUcGGCCucgcggcGCUG-GAGCAg -3'
miRNA:   3'- -CGCGUcCGACGuCUGG-------CGACaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 32867 0.68 0.335769
Target:  5'- cCGCAGuacaaGCUGCAG-CCGCUGUucgaGGCGu -3'
miRNA:   3'- cGCGUC-----CGACGUCuGGCGACAc---UCGU- -5'
26320 5' -58.8 NC_005345.2 + 37573 0.69 0.319811
Target:  5'- -gGCGGGCgcagGCGGGCUGCagGcGGGCGa -3'
miRNA:   3'- cgCGUCCGa---CGUCUGGCGa-CaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 23963 0.73 0.171452
Target:  5'- cCGCGGGCUGCugucgcGGCCGCgagGcugGGGCAa -3'
miRNA:   3'- cGCGUCCGACGu-----CUGGCGa--Ca--CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 9729 0.68 0.355676
Target:  5'- cGCGCGGGCcGC-GACCGCgccgacgcucccGGGCAc -3'
miRNA:   3'- -CGCGUCCGaCGuCUGGCGaca---------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 7365 0.71 0.218184
Target:  5'- gGCGCagccGGGCgggGguGGCCGCUGaUGuGGCAu -3'
miRNA:   3'- -CGCG----UCCGa--CguCUGGCGAC-AC-UCGU- -5'
26320 5' -58.8 NC_005345.2 + 19090 0.69 0.319811
Target:  5'- cGUGCGGGCcgUGCcguGGCUGaUGUGGGCGc -3'
miRNA:   3'- -CGCGUCCG--ACGu--CUGGCgACACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 32043 0.68 0.359926
Target:  5'- -gGCAuGGCUGCcggucGGGCUGCUGUccgaggacggugcGAGCGa -3'
miRNA:   3'- cgCGU-CCGACG-----UCUGGCGACA-------------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 30698 0.68 0.369401
Target:  5'- -gGCcGGCUGCGGgugGCCGCgGUGAucgGCGa -3'
miRNA:   3'- cgCGuCCGACGUC---UGGCGaCACU---CGU- -5'
26320 5' -58.8 NC_005345.2 + 19129 0.71 0.224001
Target:  5'- aUGguGGCUGCGGGCCGCaUG-GcGCGc -3'
miRNA:   3'- cGCguCCGACGUCUGGCG-ACaCuCGU- -5'
26320 5' -58.8 NC_005345.2 + 47112 0.69 0.312048
Target:  5'- cGUGUccuguGGCUGCAGGCCgGCcccgGAGCAg -3'
miRNA:   3'- -CGCGu----CCGACGUCUGG-CGaca-CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.