Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26320 | 5' | -58.8 | NC_005345.2 | + | 3332 | 0.67 | 0.387959 |
Target: 5'- gGCGUcacucGGGCUGCGGgcGCCGCguucgaucgcgcgGAGCAu -3' miRNA: 3'- -CGCG-----UCCGACGUC--UGGCGaca----------CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 4358 | 0.68 | 0.36078 |
Target: 5'- uGCcuCGGGCggGCGGGCCGCUcgGUGGGgGu -3' miRNA: 3'- -CGc-GUCCGa-CGUCUGGCGA--CACUCgU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 5049 | 1.1 | 0.00027 |
Target: 5'- gGCGCAGGCUGCAGACCGCUGUGAGCAg -3' miRNA: 3'- -CGCGUCCGACGUCUGGCGACACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 5330 | 0.66 | 0.433566 |
Target: 5'- gGCGaAGcGCUGCAGugCGgUgccGUGGGCGc -3' miRNA: 3'- -CGCgUC-CGACGUCugGCgA---CACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 7365 | 0.71 | 0.218184 |
Target: 5'- gGCGCagccGGGCgggGguGGCCGCUGaUGuGGCAu -3' miRNA: 3'- -CGCG----UCCGa--CguCUGGCGAC-AC-UCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 8044 | 0.67 | 0.414571 |
Target: 5'- cGCGCAGcugcacgaGCUGCAGaucaagcucGCCGCc--GAGCAg -3' miRNA: 3'- -CGCGUC--------CGACGUC---------UGGCGacaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 9161 | 0.67 | 0.378162 |
Target: 5'- gGCGCGGGUgcaCGGGCCGgUcGUGuGCGa -3' miRNA: 3'- -CGCGUCCGac-GUCUGGCgA-CACuCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 9353 | 0.66 | 0.453056 |
Target: 5'- aUGguGGCUGCGGGCgGCc--GGGCu -3' miRNA: 3'- cGCguCCGACGUCUGgCGacaCUCGu -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 9690 | 0.73 | 0.157978 |
Target: 5'- gGCuGCAGGCcgaucaGCGGGCCGCcgcGUGAGCc -3' miRNA: 3'- -CG-CGUCCGa-----CGUCUGGCGa--CACUCGu -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 9729 | 0.68 | 0.355676 |
Target: 5'- cGCGCGGGCcGC-GACCGCgccgacgcucccGGGCAc -3' miRNA: 3'- -CGCGUCCGaCGuCUGGCGaca---------CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 10297 | 0.66 | 0.433566 |
Target: 5'- gGCGCGGGCUGUGGgaGCgGCccGgcacGAGCGu -3' miRNA: 3'- -CGCGUCCGACGUC--UGgCGa-Ca---CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 11492 | 0.67 | 0.386165 |
Target: 5'- cGCGCAGGCgGCccgcaccgacgccGGACUGCaGccgcucacgaaUGAGCAa -3' miRNA: 3'- -CGCGUCCGaCG-------------UCUGGCGaC-----------ACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 11597 | 0.73 | 0.166851 |
Target: 5'- cGCGguGGCgugggGCGG-CCGCUGgcggGAGUg -3' miRNA: 3'- -CGCguCCGa----CGUCuGGCGACa---CUCGu -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 12442 | 0.69 | 0.303674 |
Target: 5'- cGCGCGGGCUaccucgcGCAGcUCGCg--GGGCAg -3' miRNA: 3'- -CGCGUCCGA-------CGUCuGGCGacaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 14904 | 0.68 | 0.369401 |
Target: 5'- aGCaGCGGGCgaaGCGGGCCGCggcgcGGCGg -3' miRNA: 3'- -CG-CGUCCGa--CGUCUGGCGacac-UCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 15702 | 0.66 | 0.462979 |
Target: 5'- cCGCAGGUggugacacaccuUGCGGGCCGCccgccacccugcUGUGAaCAg -3' miRNA: 3'- cGCGUCCG------------ACGUCUGGCG------------ACACUcGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 15768 | 0.66 | 0.433566 |
Target: 5'- cCGC-GGCUGUAGccauguGCCGCccucccguccggUGUGGGCGg -3' miRNA: 3'- cGCGuCCGACGUC------UGGCG------------ACACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 15832 | 0.67 | 0.387061 |
Target: 5'- cGCGUggagauGGGC-GCGGGcCCGCUcgcgGUGGGCGa -3' miRNA: 3'- -CGCG------UCCGaCGUCU-GGCGA----CACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 16395 | 0.74 | 0.137637 |
Target: 5'- uCGUcGGCUcGUAcACCGCUGUGAGCAa -3' miRNA: 3'- cGCGuCCGA-CGUcUGGCGACACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 18782 | 0.67 | 0.378162 |
Target: 5'- uGCGCccGCcGCGGGCUGCcGUcGGGCAg -3' miRNA: 3'- -CGCGucCGaCGUCUGGCGaCA-CUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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