miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26322 3' -64.2 NC_005345.2 + 35009 0.66 0.310287
Target:  5'- gGGCGcUGC-GGCGGCcacgUGGGggCGGGa -3'
miRNA:   3'- -CCGCcACGcCCGUCGa---GCCCgaGCCC- -5'
26322 3' -64.2 NC_005345.2 + 23805 0.66 0.310287
Target:  5'- aGGaCGGcgGCGacaGCAGCgucgaucuuguUCGGGCugUCGGGg -3'
miRNA:   3'- -CC-GCCa-CGCc--CGUCG-----------AGCCCG--AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 45998 0.66 0.310287
Target:  5'- uGUGGUgGCGGGCc-CUCGGGgUCGc- -3'
miRNA:   3'- cCGCCA-CGCCCGucGAGCCCgAGCcc -5'
26322 3' -64.2 NC_005345.2 + 30136 0.66 0.309565
Target:  5'- gGGCGGcgacGuCGaGGCGccgccccGCUCGGGCcgaggcUCGGGc -3'
miRNA:   3'- -CCGCCa---C-GC-CCGU-------CGAGCCCG------AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 31466 0.66 0.303126
Target:  5'- cGgGGUGCGGGU-GUgaggCGGGCgagCGcGGc -3'
miRNA:   3'- cCgCCACGCCCGuCGa---GCCCGa--GC-CC- -5'
26322 3' -64.2 NC_005345.2 + 31711 0.66 0.303126
Target:  5'- cGGUccucgGGUGCGcGGacggGGUUCGGGUgcaccUCGGGn -3'
miRNA:   3'- -CCG-----CCACGC-CCg---UCGAGCCCG-----AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 21850 0.66 0.303126
Target:  5'- cGGCaugcGUGCGGGCgAGCugcaggUCGGuCUCGGu -3'
miRNA:   3'- -CCGc---CACGCCCG-UCG------AGCCcGAGCCc -5'
26322 3' -64.2 NC_005345.2 + 34904 0.66 0.303126
Target:  5'- cGGgGGaucgUGCaGGCAGCgUGGGC-CGGa -3'
miRNA:   3'- -CCgCC----ACGcCCGUCGaGCCCGaGCCc -5'
26322 3' -64.2 NC_005345.2 + 38254 0.66 0.296092
Target:  5'- aGGCGugaucgaugacGUGCGGGUg---CGGGCaCGGGa -3'
miRNA:   3'- -CCGC-----------CACGCCCGucgaGCCCGaGCCC- -5'
26322 3' -64.2 NC_005345.2 + 33039 0.66 0.289186
Target:  5'- cGgGGUGCGGucCGGCUCgacguuGGGCUCGuaGGu -3'
miRNA:   3'- cCgCCACGCCc-GUCGAG------CCCGAGC--CC- -5'
26322 3' -64.2 NC_005345.2 + 30697 0.66 0.289186
Target:  5'- cGGcCGGcUGCGGGUGGC-CGcGGUgaUCGGc -3'
miRNA:   3'- -CC-GCC-ACGCCCGUCGaGC-CCG--AGCCc -5'
26322 3' -64.2 NC_005345.2 + 36529 0.66 0.288503
Target:  5'- uGGCGuGgGUGGGCgaacgcggccccgAGCUCGuGcGCuUCGGGg -3'
miRNA:   3'- -CCGC-CaCGCCCG-------------UCGAGC-C-CG-AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 3224 0.66 0.287821
Target:  5'- aGCGGacaguuCGGGCAGCgcacugugcacgCGGcGCUCGGu -3'
miRNA:   3'- cCGCCac----GCCCGUCGa-----------GCC-CGAGCCc -5'
26322 3' -64.2 NC_005345.2 + 29061 0.66 0.28714
Target:  5'- uGGCGGcgGCGGGCucgccgagaccgcgAGCUaccGCUCGuGGg -3'
miRNA:   3'- -CCGCCa-CGCCCG--------------UCGAgccCGAGC-CC- -5'
26322 3' -64.2 NC_005345.2 + 25680 0.66 0.282408
Target:  5'- -uCGGUGCaccGGCuGCUCGcGCUCGGc -3'
miRNA:   3'- ccGCCACGc--CCGuCGAGCcCGAGCCc -5'
26322 3' -64.2 NC_005345.2 + 18528 0.66 0.275755
Target:  5'- cGGCGccauGUGCaccgguGGGCuGCUCGgGGCgcucgcCGGGu -3'
miRNA:   3'- -CCGC----CACG------CCCGuCGAGC-CCGa-----GCCC- -5'
26322 3' -64.2 NC_005345.2 + 19418 0.66 0.275097
Target:  5'- cGGuCGGcUGCGccgcgucGGUcGCacCGGGCUCGGGc -3'
miRNA:   3'- -CC-GCC-ACGC-------CCGuCGa-GCCCGAGCCC- -5'
26322 3' -64.2 NC_005345.2 + 26878 0.66 0.273784
Target:  5'- cGGCGGUGCGGucgaugggugaggcGCuGCaggCGGcGCUCGc- -3'
miRNA:   3'- -CCGCCACGCC--------------CGuCGa--GCC-CGAGCcc -5'
26322 3' -64.2 NC_005345.2 + 21991 0.66 0.268583
Target:  5'- cGGCGGgacGCcgcgcagcgccucGGGCAGCUCGacgccGGC-CGGu -3'
miRNA:   3'- -CCGCCa--CG-------------CCCGUCGAGC-----CCGaGCCc -5'
26322 3' -64.2 NC_005345.2 + 42951 0.66 0.267939
Target:  5'- cGCGGacggGcCGGGCGGCacgcgcacgaacCGGGC-CGGGc -3'
miRNA:   3'- cCGCCa---C-GCCCGUCGa-----------GCCCGaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.