Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26326 | 3' | -57.8 | NC_005345.2 | + | 25368 | 0.71 | 0.257176 |
Target: 5'- uGGCGUgGCAGUgccggcucgacgcGAucGCcgccGGCCUCGCc -3' miRNA: 3'- -CCGCGgCGUCA-------------CUuuCGu---CCGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9594 | 0.71 | 0.257834 |
Target: 5'- gGGCGUgCGaGGUGcAGAGCgAGuGCCUCGCg -3' miRNA: 3'- -CCGCG-GCgUCAC-UUUCG-UC-CGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 28970 | 0.71 | 0.257834 |
Target: 5'- aGGCGCUGCgcgaccugcaGGUGAAccGCuuccGCCUCGCg -3' miRNA: 3'- -CCGCGGCG----------UCACUUu-CGuc--CGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 37351 | 0.71 | 0.263814 |
Target: 5'- -aCGCCGCGGcGugcccGAGCAgcuuugcGGCCUCGCu -3' miRNA: 3'- ccGCGGCGUCaCu----UUCGU-------CCGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 18217 | 0.71 | 0.278204 |
Target: 5'- gGGCGCCGC-GUucGGGUAcGGgCUCGCc -3' miRNA: 3'- -CCGCGGCGuCAcuUUCGU-CCgGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 24759 | 0.71 | 0.285273 |
Target: 5'- uGGCuGUCGCAGcccGAAGuGCGGGCgUCGUc -3' miRNA: 3'- -CCG-CGGCGUCa--CUUU-CGUCCGgAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 26797 | 0.71 | 0.292483 |
Target: 5'- cGGCGCCGC-GUc---GCAGGCgcugCUCGCc -3' miRNA: 3'- -CCGCGGCGuCAcuuuCGUCCG----GAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 15826 | 0.71 | 0.292483 |
Target: 5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3' miRNA: 3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 35009 | 0.71 | 0.292483 |
Target: 5'- gGGCGCUGCGgcggccacGUGggGGCGGGaCCg-GUg -3' miRNA: 3'- -CCGCGGCGU--------CACuuUCGUCC-GGagCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 30708 | 0.7 | 0.299835 |
Target: 5'- gGGUgGCCGCGGUGAucGGCgAGGaCCUgcugcCGCa -3' miRNA: 3'- -CCG-CGGCGUCACUu-UCG-UCC-GGA-----GCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 8587 | 0.7 | 0.299835 |
Target: 5'- gGGCGUCaCAGUGA--GCAGGUCggGCa -3' miRNA: 3'- -CCGCGGcGUCACUuuCGUCCGGagCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 3427 | 0.7 | 0.299835 |
Target: 5'- gGGCGCgGCGGcGGGcggcgauGCGGGCCccgagcUCGCg -3' miRNA: 3'- -CCGCGgCGUCaCUUu------CGUCCGG------AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 28972 | 0.7 | 0.314966 |
Target: 5'- aGGCcccGCCGCAucgGAAugcGGCGGGgCUCGUg -3' miRNA: 3'- -CCG---CGGCGUca-CUU---UCGUCCgGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 48562 | 0.7 | 0.314966 |
Target: 5'- gGGCGUCGCGGau---GCGGGCgccgaugagCUCGCg -3' miRNA: 3'- -CCGCGGCGUCacuuuCGUCCG---------GAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 36186 | 0.7 | 0.314966 |
Target: 5'- uGGuCGCCGguGguccuGCAGGCCcUGCa -3' miRNA: 3'- -CC-GCGGCguCacuuuCGUCCGGaGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 44874 | 0.7 | 0.314966 |
Target: 5'- cGGCgGCCGCGucGcGAGgcgcAGCAacguGGCCUCGCc -3' miRNA: 3'- -CCG-CGGCGU--CaCUU----UCGU----CCGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 10296 | 0.7 | 0.320396 |
Target: 5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3' miRNA: 3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 27997 | 0.7 | 0.322745 |
Target: 5'- gGGCGUCGCGuagggcGUcGAGGaugcggagcgcGCAGGCCUCGa -3' miRNA: 3'- -CCGCGGCGU------CA-CUUU-----------CGUCCGGAGCg -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 37576 | 0.7 | 0.322745 |
Target: 5'- gGGCGCagGCGGgcUGcAGGCGGGCgaccggCUCGCg -3' miRNA: 3'- -CCGCGg-CGUC--ACuUUCGUCCG------GAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9964 | 0.7 | 0.330666 |
Target: 5'- cGCG-CGCGGUGAGcucguGUAGGCgUCGUc -3' miRNA: 3'- cCGCgGCGUCACUUu----CGUCCGgAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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