miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 5' -55.2 NC_005345.2 + 30520 0.66 0.727325
Target:  5'- cGGGCGAgggugcugccGCUCugCgugCCgGUGACGg -3'
miRNA:   3'- -CCCGCUa---------UGAGugGacaGGaCGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 12237 0.66 0.727325
Target:  5'- uGGCGAUgaucccGCUCACCcgGUCCcGCuuCGu -3'
miRNA:   3'- cCCGCUA------UGAGUGGa-CAGGaCGcuGC- -5'
26326 5' -55.2 NC_005345.2 + 4899 0.66 0.727325
Target:  5'- -aGuCGAUGCUCGCCgagcUgCUGCGGCa -3'
miRNA:   3'- ccC-GCUAUGAGUGGac--AgGACGCUGc -5'
26326 5' -55.2 NC_005345.2 + 35284 0.66 0.716673
Target:  5'- cGGCGGaGCgagcugUACUUGUCCgcgaGCGugGg -3'
miRNA:   3'- cCCGCUaUGa-----GUGGACAGGa---CGCugC- -5'
26326 5' -55.2 NC_005345.2 + 16745 0.66 0.712389
Target:  5'- cGGUGGcUGCugUCGCCguuccgcacguucGUCCUGUGGCGg -3'
miRNA:   3'- cCCGCU-AUG--AGUGGa------------CAGGACGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 36836 0.66 0.705938
Target:  5'- cGGCGGUGCagGCCggacCCUgGCGGCa -3'
miRNA:   3'- cCCGCUAUGagUGGaca-GGA-CGCUGc -5'
26326 5' -55.2 NC_005345.2 + 32799 0.66 0.69513
Target:  5'- cGGCGAUGCUCGgCgcGUUCcGCGAgGc -3'
miRNA:   3'- cCCGCUAUGAGUgGa-CAGGaCGCUgC- -5'
26326 5' -55.2 NC_005345.2 + 22086 0.67 0.673343
Target:  5'- cGGUGAUcuGCccCAUCUGcgCCUGCGugGc -3'
miRNA:   3'- cCCGCUA--UGa-GUGGACa-GGACGCugC- -5'
26326 5' -55.2 NC_005345.2 + 9229 0.67 0.673343
Target:  5'- cGGCGAcGCUCAagUCguacgCCUGCGACc -3'
miRNA:   3'- cCCGCUaUGAGU--GGaca--GGACGCUGc -5'
26326 5' -55.2 NC_005345.2 + 10803 0.67 0.6514
Target:  5'- aGGCGGaccgGCUCGaUUGgugCCUGCGGCa -3'
miRNA:   3'- cCCGCUa---UGAGUgGACa--GGACGCUGc -5'
26326 5' -55.2 NC_005345.2 + 8945 0.67 0.630487
Target:  5'- uGGGCGGgcugcgggugcucggGCUCgACCUGUCgCUccGuCGACGg -3'
miRNA:   3'- -CCCGCUa--------------UGAG-UGGACAG-GA--C-GCUGC- -5'
26326 5' -55.2 NC_005345.2 + 34985 0.67 0.618378
Target:  5'- aGGGCGugcagGUACUCggcGCCggggCgCUGCGGCGg -3'
miRNA:   3'- -CCCGC-----UAUGAG---UGGaca-G-GACGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 6834 0.67 0.618378
Target:  5'- cGGGCGGga-UCgACaugGUCCUcGCGGCGa -3'
miRNA:   3'- -CCCGCUaugAG-UGga-CAGGA-CGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 15385 0.67 0.618378
Target:  5'- cGGgGGUACUUgGCCcgGgugcugCCUGCGACGg -3'
miRNA:   3'- cCCgCUAUGAG-UGGa-Ca-----GGACGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 39383 0.68 0.607381
Target:  5'- -cGCGAUGC-CGCCggUGUCCUGCaGGgGa -3'
miRNA:   3'- ccCGCUAUGaGUGG--ACAGGACG-CUgC- -5'
26326 5' -55.2 NC_005345.2 + 15509 0.69 0.552895
Target:  5'- cGGGCGuUGCUC--UUGUCCUGCucgaucgccugGACGa -3'
miRNA:   3'- -CCCGCuAUGAGugGACAGGACG-----------CUGC- -5'
26326 5' -55.2 NC_005345.2 + 12886 0.69 0.531485
Target:  5'- cGGGUGGccGCUCGCCUcgaucgCC-GCGACGg -3'
miRNA:   3'- -CCCGCUa-UGAGUGGAca----GGaCGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 28794 0.69 0.531485
Target:  5'- gGGGCGAUGCUCACgCacggcaagGUCCgcaccGCG-CGc -3'
miRNA:   3'- -CCCGCUAUGAGUG-Ga-------CAGGa----CGCuGC- -5'
26326 5' -55.2 NC_005345.2 + 20605 0.71 0.439617
Target:  5'- cGGCGGgcGCUCGCaaGUCUcgGCGACGg -3'
miRNA:   3'- cCCGCUa-UGAGUGgaCAGGa-CGCUGC- -5'
26326 5' -55.2 NC_005345.2 + 35876 0.71 0.393548
Target:  5'- gGGGCGucgucgccgacgagcUGCUCGCCgGUCgUGcCGACGg -3'
miRNA:   3'- -CCCGCu--------------AUGAGUGGaCAGgAC-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.