miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26330 5' -56.2 NC_005345.2 + 38268 0.66 0.632257
Target:  5'- -aCGUGCG-GGUGcGGGCACGgGacGCGCc -3'
miRNA:   3'- gaGCAUGUgCCAU-CCCGUGCgU--CGUG- -5'
26330 5' -56.2 NC_005345.2 + 12617 0.66 0.632257
Target:  5'- gCUCGgccggGCACGGcucGGGCACcgggccucggaGCGGgCGCa -3'
miRNA:   3'- -GAGCa----UGUGCCau-CCCGUG-----------CGUC-GUG- -5'
26330 5' -56.2 NC_005345.2 + 23675 0.66 0.621169
Target:  5'- gUCGcgGC-CGGUcGGGCGgGCcgAGCGCa -3'
miRNA:   3'- gAGCa-UGuGCCAuCCCGUgCG--UCGUG- -5'
26330 5' -56.2 NC_005345.2 + 37419 0.66 0.621169
Target:  5'- gUCGUGCgGCGaGUu-GGUACGCGGCGg -3'
miRNA:   3'- gAGCAUG-UGC-CAucCCGUGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 43904 0.66 0.621169
Target:  5'- aUCGc-CACGc---GGCGCGCAGCGCg -3'
miRNA:   3'- gAGCauGUGCcaucCCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 35802 0.66 0.617844
Target:  5'- aUCGUGCucaugaGCGGUGucccuucuucugucGGGCgaggGCGCGGCGg -3'
miRNA:   3'- gAGCAUG------UGCCAU--------------CCCG----UGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 22328 0.66 0.610091
Target:  5'- uUCGggucUGCACGuGUGGGG-GCGCGGguCg -3'
miRNA:   3'- gAGC----AUGUGC-CAUCCCgUGCGUCguG- -5'
26330 5' -56.2 NC_005345.2 + 41086 0.66 0.610091
Target:  5'- -cUGUACACGaccaggcuGUuuacgcGGGC-CGCAGCACg -3'
miRNA:   3'- gaGCAUGUGC--------CAu-----CCCGuGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 31189 0.66 0.610091
Target:  5'- aCUCGgGCGCGGcGGGuGCgGCgGguGCGCa -3'
miRNA:   3'- -GAGCaUGUGCCaUCC-CG-UG-CguCGUG- -5'
26330 5' -56.2 NC_005345.2 + 2033 0.66 0.599031
Target:  5'- cCUCGUcgagcgggcccgGCGCGGcccggcGGGC-CGCGGCGa -3'
miRNA:   3'- -GAGCA------------UGUGCCau----CCCGuGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 45124 0.66 0.599031
Target:  5'- gUCGUcgcACAgGGgcGGGacaACGCGGaCGCg -3'
miRNA:   3'- gAGCA---UGUgCCauCCCg--UGCGUC-GUG- -5'
26330 5' -56.2 NC_005345.2 + 32113 0.66 0.588001
Target:  5'- gCUCGggcaGCGCGGgugcgAGGGCGaucgccucgGCGGCAg -3'
miRNA:   3'- -GAGCa---UGUGCCa----UCCCGUg--------CGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 18535 0.66 0.588001
Target:  5'- -aUGUGCAcCGGU-GGGCugcuCGgGGCGCu -3'
miRNA:   3'- gaGCAUGU-GCCAuCCCGu---GCgUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 36022 0.66 0.5869
Target:  5'- cCUUGacGCACGGc-GGGCguucgaggugaaaGCGCGGCACc -3'
miRNA:   3'- -GAGCa-UGUGCCauCCCG-------------UGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 34988 0.67 0.577008
Target:  5'- -gCGUGCA-GGUacucggcgccGGGGCGCuGCGGCGg -3'
miRNA:   3'- gaGCAUGUgCCA----------UCCCGUG-CGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 20321 0.67 0.566061
Target:  5'- -gCGUcCACGGcgaUGGgcaGGCGCGCGGUGCg -3'
miRNA:   3'- gaGCAuGUGCC---AUC---CCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 39526 0.67 0.566061
Target:  5'- uCUCGgGCACGGcgAGcGCAUGCgcgaGGCACu -3'
miRNA:   3'- -GAGCaUGUGCCa-UCcCGUGCG----UCGUG- -5'
26330 5' -56.2 NC_005345.2 + 8298 0.67 0.555169
Target:  5'- -cCGUGCuguUGGgcgccaUGGcGGCGCGCAGCAg -3'
miRNA:   3'- gaGCAUGu--GCC------AUC-CCGUGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 48337 0.67 0.551913
Target:  5'- gCUCGUcgucuuccuugaacACAccggucucCGGUGGGGCgagGCGaCGGCGCu -3'
miRNA:   3'- -GAGCA--------------UGU--------GCCAUCCCG---UGC-GUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 6541 0.67 0.544339
Target:  5'- -gCGgggcgGgGCGGUGGGGgACGUGGCuACg -3'
miRNA:   3'- gaGCa----UgUGCCAUCCCgUGCGUCG-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.