miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26339 3' -61.9 NC_005345.2 + 4917 1.1 0.000155
Target:  5'- uGCUGCGGCAGCCGCACGUGCGCUCCGg -3'
miRNA:   3'- -CGACGCCGUCGGCGUGCACGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 10851 0.76 0.067519
Target:  5'- aGCUGCGGUgggcggacuGCCGCACGcgGCGCgUCCc -3'
miRNA:   3'- -CGACGCCGu--------CGGCGUGCa-CGCG-AGGc -5'
26339 3' -61.9 NC_005345.2 + 18025 0.74 0.091648
Target:  5'- cGCgGCGGguGCgGCGgGUGCGCacCCGg -3'
miRNA:   3'- -CGaCGCCguCGgCGUgCACGCGa-GGC- -5'
26339 3' -61.9 NC_005345.2 + 8683 0.74 0.094209
Target:  5'- cGCgGCGGUGGCCGUgACGUGgGCggcCCGg -3'
miRNA:   3'- -CGaCGCCGUCGGCG-UGCACgCGa--GGC- -5'
26339 3' -61.9 NC_005345.2 + 5248 0.74 0.099536
Target:  5'- cGCUGCGcGCcGCCGUggcgaugcaGCGggacGCGCUCCGc -3'
miRNA:   3'- -CGACGC-CGuCGGCG---------UGCa---CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 23582 0.73 0.105146
Target:  5'- aGCUGCGGCugcgGGUCGCgGCGUucgGCGCgacgCCGg -3'
miRNA:   3'- -CGACGCCG----UCGGCG-UGCA---CGCGa---GGC- -5'
26339 3' -61.9 NC_005345.2 + 36784 0.73 0.113811
Target:  5'- gGCUuCGGCAGCUGCACGUccacgauGCGCgcagUCGg -3'
miRNA:   3'- -CGAcGCCGUCGGCGUGCA-------CGCGa---GGC- -5'
26339 3' -61.9 NC_005345.2 + 40183 0.73 0.120497
Target:  5'- aGCUGCGGaucgaGGCCG-GCGUGCaGCUCgGc -3'
miRNA:   3'- -CGACGCCg----UCGGCgUGCACG-CGAGgC- -5'
26339 3' -61.9 NC_005345.2 + 10144 0.72 0.127203
Target:  5'- --gGCGGCGGCCGCucuGCGgaGCGC-CCGc -3'
miRNA:   3'- cgaCGCCGUCGGCG---UGCa-CGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 19134 0.72 0.134253
Target:  5'- gGCUGCGG--GCCGCAUG-GCGCgccacCCGg -3'
miRNA:   3'- -CGACGCCguCGGCGUGCaCGCGa----GGC- -5'
26339 3' -61.9 NC_005345.2 + 46388 0.72 0.134253
Target:  5'- ----aGGCcGCCGCGCGUggcGCGCUCCa -3'
miRNA:   3'- cgacgCCGuCGGCGUGCA---CGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 13200 0.72 0.143956
Target:  5'- --aGCGGCAGcCCGCGCGgcgagcacaccccGCGCcCCGg -3'
miRNA:   3'- cgaCGCCGUC-GGCGUGCa------------CGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 44156 0.72 0.145504
Target:  5'- cGCUGUGaGCAGCUGCAgcccauCG-GCGCUCgGc -3'
miRNA:   3'- -CGACGC-CGUCGGCGU------GCaCGCGAGgC- -5'
26339 3' -61.9 NC_005345.2 + 47640 0.71 0.153476
Target:  5'- cGCcGUGGgGGCCGuCACGaGCGUUCCu -3'
miRNA:   3'- -CGaCGCCgUCGGC-GUGCaCGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 35942 0.71 0.161843
Target:  5'- cGCUGCaccGGCAGCuCGCcgguGCGguugaUGUGCUCCa -3'
miRNA:   3'- -CGACG---CCGUCG-GCG----UGC-----ACGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 4160 0.7 0.179815
Target:  5'- --aGCGGguGUCGaCGCGgcagGCGCUCaCGg -3'
miRNA:   3'- cgaCGCCguCGGC-GUGCa---CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 14597 0.7 0.184577
Target:  5'- aGCgUGCGGCGGUCgGgGCgGUGCGCUgcucCCGg -3'
miRNA:   3'- -CG-ACGCCGUCGG-CgUG-CACGCGA----GGC- -5'
26339 3' -61.9 NC_005345.2 + 8951 0.7 0.18945
Target:  5'- gGCUGCGGguGCUcggGCuCGaccUGuCGCUCCGu -3'
miRNA:   3'- -CGACGCCguCGG---CGuGC---AC-GCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 47280 0.7 0.194435
Target:  5'- --gGCGGguGCgaaUGCACGUGUccggguccgGCUCCGg -3'
miRNA:   3'- cgaCGCCguCG---GCGUGCACG---------CGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 9501 0.7 0.194435
Target:  5'- --aGUGGCAGUCGCGggcccUGUGCGCgcagaCCGa -3'
miRNA:   3'- cgaCGCCGUCGGCGU-----GCACGCGa----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.