miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26339 3' -61.9 NC_005345.2 + 4917 1.1 0.000155
Target:  5'- uGCUGCGGCAGCCGCACGUGCGCUCCGg -3'
miRNA:   3'- -CGACGCCGUCGGCGUGCACGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 26611 0.69 0.215538
Target:  5'- cGCUGCGGCgcaGGCCG---GUGUGC-CCGa -3'
miRNA:   3'- -CGACGCCG---UCGGCgugCACGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 42959 0.69 0.225087
Target:  5'- gGCcggGCGGCAcgcgcacgaaccggGCCGgGCGUGUGgUCCu -3'
miRNA:   3'- -CGa--CGCCGU--------------CGGCgUGCACGCgAGGc -5'
26339 3' -61.9 NC_005345.2 + 45885 0.66 0.365554
Target:  5'- aGCUGCgcacgggguaccucGGCAcgagcGCCGCGugcacaGUGCGCUgcCCGa -3'
miRNA:   3'- -CGACG--------------CCGU-----CGGCGUg-----CACGCGA--GGC- -5'
26339 3' -61.9 NC_005345.2 + 23582 0.73 0.105146
Target:  5'- aGCUGCGGCugcgGGUCGCgGCGUucgGCGCgacgCCGg -3'
miRNA:   3'- -CGACGCCG----UCGGCG-UGCA---CGCGa---GGC- -5'
26339 3' -61.9 NC_005345.2 + 40183 0.73 0.120497
Target:  5'- aGCUGCGGaucgaGGCCG-GCGUGCaGCUCgGc -3'
miRNA:   3'- -CGACGCCg----UCGGCgUGCACG-CGAGgC- -5'
26339 3' -61.9 NC_005345.2 + 19134 0.72 0.134253
Target:  5'- gGCUGCGG--GCCGCAUG-GCGCgccacCCGg -3'
miRNA:   3'- -CGACGCCguCGGCGUGCaCGCGa----GGC- -5'
26339 3' -61.9 NC_005345.2 + 46388 0.72 0.134253
Target:  5'- ----aGGCcGCCGCGCGUggcGCGCUCCa -3'
miRNA:   3'- cgacgCCGuCGGCGUGCA---CGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 8951 0.7 0.18945
Target:  5'- gGCUGCGGguGCUcggGCuCGaccUGuCGCUCCGu -3'
miRNA:   3'- -CGACGCCguCGG---CGuGC---AC-GCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 33078 0.69 0.210085
Target:  5'- -gUGCGGCAGCUGcCACGcacCGC-CCGg -3'
miRNA:   3'- cgACGCCGUCGGC-GUGCac-GCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 4274 0.7 0.199535
Target:  5'- uGCUGCGccucgcgacGCGGCCGcCGCGggGCGCcUCGg -3'
miRNA:   3'- -CGACGC---------CGUCGGC-GUGCa-CGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 4160 0.7 0.179815
Target:  5'- --aGCGGguGUCGaCGCGgcagGCGCUCaCGg -3'
miRNA:   3'- cgaCGCCguCGGC-GUGCa---CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 10851 0.76 0.067519
Target:  5'- aGCUGCGGUgggcggacuGCCGCACGcgGCGCgUCCc -3'
miRNA:   3'- -CGACGCCGu--------CGGCGUGCa-CGCG-AGGc -5'
26339 3' -61.9 NC_005345.2 + 12587 0.69 0.209547
Target:  5'- cGCUGuuGCGGCCGCGauCGUcggcuacGCGCUCgGc -3'
miRNA:   3'- -CGACgcCGUCGGCGU--GCA-------CGCGAGgC- -5'
26339 3' -61.9 NC_005345.2 + 8683 0.74 0.094209
Target:  5'- cGCgGCGGUGGCCGUgACGUGgGCggcCCGg -3'
miRNA:   3'- -CGaCGCCGUCGGCG-UGCACgCGa--GGC- -5'
26339 3' -61.9 NC_005345.2 + 13200 0.72 0.143956
Target:  5'- --aGCGGCAGcCCGCGCGgcgagcacaccccGCGCcCCGg -3'
miRNA:   3'- cgaCGCCGUC-GGCGUGCa------------CGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 39560 0.69 0.209547
Target:  5'- --cGCGGCcggucccGGCCGguCGUGCGUUCg- -3'
miRNA:   3'- cgaCGCCG-------UCGGCguGCACGCGAGgc -5'
26339 3' -61.9 NC_005345.2 + 32471 0.69 0.215538
Target:  5'- --cGCaGGCGGUCGUcacccccugACG-GCGCUCCGg -3'
miRNA:   3'- cgaCG-CCGUCGGCG---------UGCaCGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 5248 0.74 0.099536
Target:  5'- cGCUGCGcGCcGCCGUggcgaugcaGCGggacGCGCUCCGc -3'
miRNA:   3'- -CGACGC-CGuCGGCG---------UGCa---CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 10144 0.72 0.127203
Target:  5'- --gGCGGCGGCCGCucuGCGgaGCGC-CCGc -3'
miRNA:   3'- cgaCGCCGUCGGCG---UGCa-CGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.