miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26339 3' -61.9 NC_005345.2 + 477 0.66 0.343473
Target:  5'- uGgaGUGGUGGCCGCGgGUGCacgacCUUCGc -3'
miRNA:   3'- -CgaCGCCGUCGGCGUgCACGc----GAGGC- -5'
26339 3' -61.9 NC_005345.2 + 1497 0.66 0.349104
Target:  5'- aGCUGCGGCuGCCaGC-UGUGCauggagaaguacccGC-CCGa -3'
miRNA:   3'- -CGACGCCGuCGG-CGuGCACG--------------CGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 2050 0.67 0.290787
Target:  5'- gGC-GCGGCccggcgGGCCGCgGCGaaaaUGCGCUCUu -3'
miRNA:   3'- -CGaCGCCG------UCGGCG-UGC----ACGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 2778 0.66 0.335542
Target:  5'- gGCUGCucGCcGCCGCccuuCGUGagcCGCUCCa -3'
miRNA:   3'- -CGACGc-CGuCGGCGu---GCAC---GCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 4160 0.7 0.179815
Target:  5'- --aGCGGguGUCGaCGCGgcagGCGCUCaCGg -3'
miRNA:   3'- cgaCGCCguCGGC-GUGCa---CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 4274 0.7 0.199535
Target:  5'- uGCUGCGccucgcgacGCGGCCGcCGCGggGCGCcUCGg -3'
miRNA:   3'- -CGACGC---------CGUCGGC-GUGCa-CGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 4349 0.69 0.204751
Target:  5'- --cGCGGCGGCCGCGuCGcgagGCGCagCa -3'
miRNA:   3'- cgaCGCCGUCGGCGU-GCa---CGCGagGc -5'
26339 3' -61.9 NC_005345.2 + 4917 1.1 0.000155
Target:  5'- uGCUGCGGCAGCCGCACGUGCGCUCCGg -3'
miRNA:   3'- -CGACGCCGUCGGCGUGCACGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 5248 0.74 0.099536
Target:  5'- cGCUGCGcGCcGCCGUggcgaugcaGCGggacGCGCUCCGc -3'
miRNA:   3'- -CGACGC-CGuCGGCG---------UGCa---CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 6609 0.66 0.327745
Target:  5'- aGCUGUGGacCGGCgGCGguUGCGC-CCGg -3'
miRNA:   3'- -CGACGCC--GUCGgCGUgcACGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 6975 0.68 0.263633
Target:  5'- cGCUGCGGCagggcuuucggGGCCGCuguCGaugGCuGCUgCGa -3'
miRNA:   3'- -CGACGCCG-----------UCGGCGu--GCa--CG-CGAgGC- -5'
26339 3' -61.9 NC_005345.2 + 8461 0.67 0.317812
Target:  5'- gGCaGCGGCucgucgggccggucGGCCgGCGCGggcgugucGCGUUCCGu -3'
miRNA:   3'- -CGaCGCCG--------------UCGG-CGUGCa-------CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 8683 0.74 0.094209
Target:  5'- cGCgGCGGUGGCCGUgACGUGgGCggcCCGg -3'
miRNA:   3'- -CGaCGCCGUCGGCG-UGCACgCGa--GGC- -5'
26339 3' -61.9 NC_005345.2 + 8846 0.68 0.236777
Target:  5'- gGCUGCGGCAcggugaacgggggcGCgGCAUGacGCuCUCCGg -3'
miRNA:   3'- -CGACGCCGU--------------CGgCGUGCa-CGcGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 8951 0.7 0.18945
Target:  5'- gGCUGCGGguGCUcggGCuCGaccUGuCGCUCCGu -3'
miRNA:   3'- -CGACGCCguCGG---CGuGC---AC-GCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 9154 0.66 0.359736
Target:  5'- gGUUGaCGGCgcgggugcacgGGCCGguCGUGUGCgagCUGa -3'
miRNA:   3'- -CGAC-GCCG-----------UCGGCguGCACGCGa--GGC- -5'
26339 3' -61.9 NC_005345.2 + 9501 0.7 0.194435
Target:  5'- --aGUGGCAGUCGCGggcccUGUGCGCgcagaCCGa -3'
miRNA:   3'- cgaCGCCGUCGGCGU-----GCACGCGa----GGC- -5'
26339 3' -61.9 NC_005345.2 + 9690 0.66 0.343473
Target:  5'- gGCUGCaGGCcgaucagcgGGCCGcCGCGUGagcCGCgCCGc -3'
miRNA:   3'- -CGACG-CCG---------UCGGC-GUGCAC---GCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 9772 0.67 0.304434
Target:  5'- gGCUcacGCGGCGGCCcgcugaucggccuGCAgcCGgcgGCGCUCgCGg -3'
miRNA:   3'- -CGA---CGCCGUCGG-------------CGU--GCa--CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 10144 0.72 0.127203
Target:  5'- --gGCGGCGGCCGCucuGCGgaGCGC-CCGc -3'
miRNA:   3'- cgaCGCCGUCGGCG---UGCa-CGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.