Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26356 | 5' | -66.2 | NC_005345.2 | + | 15782 | 1.1 | 0.000068 |
Target: 5'- gGCCGCGCCACCGCCCCCACCCCUCUCg -3' miRNA: 3'- -CGGCGCGGUGGCGGGGGUGGGGAGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 45727 | 0.87 | 0.004886 |
Target: 5'- cGCCGCccGCCGCCGCgCCCGCCgCCUCUCu -3' miRNA: 3'- -CGGCG--CGGUGGCGgGGGUGG-GGAGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 14224 | 0.8 | 0.017199 |
Target: 5'- gGCCcuCGCCGCCGCCCUCGCgcacgCCCUCUCc -3' miRNA: 3'- -CGGc-GCGGUGGCGGGGGUG-----GGGAGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 25385 | 0.78 | 0.026027 |
Target: 5'- gGCCGCGCCACggcaugaCGCCCCCuugcuagcucuGCCCgCUCUUc -3' miRNA: 3'- -CGGCGCGGUG-------GCGGGGG-----------UGGG-GAGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 34239 | 0.78 | 0.026834 |
Target: 5'- cGCCGCGCCGCgGCCCgcuUCGCCCgCUgCUCc -3' miRNA: 3'- -CGGCGCGGUGgCGGG---GGUGGG-GA-GAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 38550 | 0.77 | 0.029159 |
Target: 5'- gGCCGCGCCGCUGCUCgugCCACCgCUCg- -3' miRNA: 3'- -CGGCGCGGUGGCGGG---GGUGGgGAGag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 30346 | 0.77 | 0.030819 |
Target: 5'- cCCGCGCCGCCGUCaCCCugCCCg--- -3' miRNA: 3'- cGGCGCGGUGGCGG-GGGugGGGagag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 1083 | 0.76 | 0.034423 |
Target: 5'- aGUCGCagagacGCCACUGCCCCCACUUCggCUCg -3' miRNA: 3'- -CGGCG------CGGUGGCGGGGGUGGGGa-GAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 8894 | 0.75 | 0.041749 |
Target: 5'- uGCC-CGCCGgCGCCCCguCCCCgCUCg -3' miRNA: 3'- -CGGcGCGGUgGCGGGGguGGGGaGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 44955 | 0.75 | 0.045337 |
Target: 5'- uGCCGCGCCGCCugcacgGCCUgCCGCCCCg--- -3' miRNA: 3'- -CGGCGCGGUGG------CGGG-GGUGGGGagag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 18266 | 0.74 | 0.049226 |
Target: 5'- gGCCGCGCCGUCGCCCgCACCCg---- -3' miRNA: 3'- -CGGCGCGGUGGCGGGgGUGGGgagag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 38992 | 0.74 | 0.058002 |
Target: 5'- cGUCGCGUCugCGCccauCCCCACCCCgaaCUg -3' miRNA: 3'- -CGGCGCGGugGCG----GGGGUGGGGa--GAg -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 15012 | 0.73 | 0.068285 |
Target: 5'- cGCCGCGCCACuCGaUCUcuggCCACCCCgaCUCu -3' miRNA: 3'- -CGGCGCGGUG-GC-GGG----GGUGGGGa-GAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 14392 | 0.72 | 0.072087 |
Target: 5'- aGCCGCGCguCACCGCCgCCGCCgCgaggaUCa -3' miRNA: 3'- -CGGCGCG--GUGGCGGgGGUGGgGag---AG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 5688 | 0.72 | 0.076093 |
Target: 5'- cGCUGCGCCGCgaacuCGCCgCCGUCCCUCg- -3' miRNA: 3'- -CGGCGCGGUG-----GCGGgGGUGGGGAGag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 12206 | 0.72 | 0.076919 |
Target: 5'- uGCCGCuguccgGCCGCCGCCUCCcgagccguggcgaugAUCCCgCUCa -3' miRNA: 3'- -CGGCG------CGGUGGCGGGGG---------------UGGGGaGAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 17675 | 0.72 | 0.077964 |
Target: 5'- cGCCGCGCuCGcCCGCCUCacacccgCACCCCggcgcCUCg -3' miRNA: 3'- -CGGCGCG-GU-GGCGGGG-------GUGGGGa----GAG- -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 13931 | 0.72 | 0.079023 |
Target: 5'- aGCCGC-CCACgGCCgCCUgaacagcaacggggcGCCCCUCUg -3' miRNA: 3'- -CGGCGcGGUGgCGG-GGG---------------UGGGGAGAg -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 3651 | 0.72 | 0.080311 |
Target: 5'- uGUCGCGgaCGCgGCCCCCACCaCCUUc- -3' miRNA: 3'- -CGGCGCg-GUGgCGGGGGUGG-GGAGag -5' |
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26356 | 5' | -66.2 | NC_005345.2 | + | 27352 | 0.71 | 0.084753 |
Target: 5'- gGCCGcCGCCAUCGaaucaguccaCCCgACCCCggCUCg -3' miRNA: 3'- -CGGC-GCGGUGGCg---------GGGgUGGGGa-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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