miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26356 5' -66.2 NC_005345.2 + 245 0.66 0.221621
Target:  5'- cUCGggaGCCAUCGCCgCCCGCaCCUUCg- -3'
miRNA:   3'- cGGCg--CGGUGGCGG-GGGUG-GGGAGag -5'
26356 5' -66.2 NC_005345.2 + 453 0.66 0.221621
Target:  5'- uCCGUGgCGCaua-CCCGCCCCUUUCa -3'
miRNA:   3'- cGGCGCgGUGgcggGGGUGGGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 1083 0.76 0.034423
Target:  5'- aGUCGCagagacGCCACUGCCCCCACUUCggCUCg -3'
miRNA:   3'- -CGGCG------CGGUGGCGGGGGUGGGGa-GAG- -5'
26356 5' -66.2 NC_005345.2 + 1998 0.69 0.140208
Target:  5'- gGCgGCGCuCACagCGCCCCCucGCUCCgcugCUCc -3'
miRNA:   3'- -CGgCGCG-GUG--GCGGGGG--UGGGGa---GAG- -5'
26356 5' -66.2 NC_005345.2 + 2778 0.7 0.104963
Target:  5'- gGCUGCucGCCGCCGCCCuucgugagCCGCUCCaagagCUCu -3'
miRNA:   3'- -CGGCG--CGGUGGCGGG--------GGUGGGGa----GAG- -5'
26356 5' -66.2 NC_005345.2 + 3024 0.66 0.205691
Target:  5'- uCCGagGCCGCCGCUUCgACCCCg--- -3'
miRNA:   3'- cGGCg-CGGUGGCGGGGgUGGGGagag -5'
26356 5' -66.2 NC_005345.2 + 3435 0.67 0.195629
Target:  5'- cGCUGCGCaCGCaGaCCCCCGCCCg---- -3'
miRNA:   3'- -CGGCGCG-GUGgC-GGGGGUGGGgagag -5'
26356 5' -66.2 NC_005345.2 + 3571 0.66 0.210888
Target:  5'- uUCGCgGCCcccgGCCGCaaccggCCCGCCCCgacCUCg -3'
miRNA:   3'- cGGCG-CGG----UGGCGg-----GGGUGGGGa--GAG- -5'
26356 5' -66.2 NC_005345.2 + 3651 0.72 0.080311
Target:  5'- uGUCGCGgaCGCgGCCCCCACCaCCUUc- -3'
miRNA:   3'- -CGGCGCg-GUGgCGGGGGUGG-GGAGag -5'
26356 5' -66.2 NC_005345.2 + 4008 0.68 0.155525
Target:  5'- aGCCGCaGCgCGuCCGCguugUCCCGCCCCUgUg -3'
miRNA:   3'- -CGGCG-CG-GU-GGCG----GGGGUGGGGAgAg -5'
26356 5' -66.2 NC_005345.2 + 4540 0.69 0.133079
Target:  5'- aGCCGgcgcUGCCGCCGCUCCUcgaugacguCCUCUUUCa -3'
miRNA:   3'- -CGGC----GCGGUGGCGGGGGu--------GGGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 5688 0.72 0.076093
Target:  5'- cGCUGCGCCGCgaacuCGCCgCCGUCCCUCg- -3'
miRNA:   3'- -CGGCGCGGUG-----GCGGgGGUGGGGAGag -5'
26356 5' -66.2 NC_005345.2 + 7801 0.66 0.205691
Target:  5'- cGCUGCGCCGCCGCCggaCGCCgUg--- -3'
miRNA:   3'- -CGGCGCGGUGGCGGgg-GUGGgGagag -5'
26356 5' -66.2 NC_005345.2 + 8894 0.75 0.041749
Target:  5'- uGCC-CGCCGgCGCCCCguCCCCgCUCg -3'
miRNA:   3'- -CGGcGCGGUgGCGGGGguGGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 9721 0.69 0.140208
Target:  5'- aGCCGCGCCgcgcggGCCGCgaCCGCgCCgacgCUCc -3'
miRNA:   3'- -CGGCGCGG------UGGCGggGGUGgGGa---GAG- -5'
26356 5' -66.2 NC_005345.2 + 10591 0.66 0.202119
Target:  5'- cGCCGUGCCggugggcgcguacGCCGagaCCuucugucgguacgggCCCACCCCggggCUCg -3'
miRNA:   3'- -CGGCGCGG-------------UGGC---GG---------------GGGUGGGGa---GAG- -5'
26356 5' -66.2 NC_005345.2 + 10955 0.7 0.102208
Target:  5'- uCC-CGCCGCCGCCCUaCGCCCgUC-Cg -3'
miRNA:   3'- cGGcGCGGUGGCGGGG-GUGGGgAGaG- -5'
26356 5' -66.2 NC_005345.2 + 11178 0.66 0.221621
Target:  5'- cGCCGCgucgaGCCACCGgaUCCCgAUCCgCUCg- -3'
miRNA:   3'- -CGGCG-----CGGUGGC--GGGGgUGGG-GAGag -5'
26356 5' -66.2 NC_005345.2 + 11572 0.66 0.22716
Target:  5'- cGCC-CGCCugcagcCCGCCUgCGCCCgC-CUCg -3'
miRNA:   3'- -CGGcGCGGu-----GGCGGGgGUGGG-GaGAG- -5'
26356 5' -66.2 NC_005345.2 + 11646 0.7 0.116695
Target:  5'- aCCGCGCCGCaGCCCgCGCCCggCg- -3'
miRNA:   3'- cGGCGCGGUGgCGGGgGUGGGgaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.