miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26356 5' -66.2 NC_005345.2 + 15782 1.1 0.000068
Target:  5'- gGCCGCGCCACCGCCCCCACCCCUCUCg -3'
miRNA:   3'- -CGGCGCGGUGGCGGGGGUGGGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 11646 0.7 0.116695
Target:  5'- aCCGCGCCGCaGCCCgCGCCCggCg- -3'
miRNA:   3'- cGGCGCGGUGgCGGGgGUGGGgaGag -5'
26356 5' -66.2 NC_005345.2 + 15247 0.69 0.129641
Target:  5'- -aCGUGgCAgaGCUCCCACCCC-CUCa -3'
miRNA:   3'- cgGCGCgGUggCGGGGGUGGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 40770 0.66 0.232816
Target:  5'- gGCCGCcgGCCGCgGUUCCaCACCUCgccgacaCUCa -3'
miRNA:   3'- -CGGCG--CGGUGgCGGGG-GUGGGGa------GAG- -5'
26356 5' -66.2 NC_005345.2 + 1083 0.76 0.034423
Target:  5'- aGUCGCagagacGCCACUGCCCCCACUUCggCUCg -3'
miRNA:   3'- -CGGCG------CGGUGGCGGGGGUGGGGa-GAG- -5'
26356 5' -66.2 NC_005345.2 + 8894 0.75 0.041749
Target:  5'- uGCC-CGCCGgCGCCCCguCCCCgCUCg -3'
miRNA:   3'- -CGGcGCGGUgGCGGGGguGGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 38992 0.74 0.058002
Target:  5'- cGUCGCGUCugCGCccauCCCCACCCCgaaCUg -3'
miRNA:   3'- -CGGCGCGGugGCG----GGGGUGGGGa--GAg -5'
26356 5' -66.2 NC_005345.2 + 15012 0.73 0.068285
Target:  5'- cGCCGCGCCACuCGaUCUcuggCCACCCCgaCUCu -3'
miRNA:   3'- -CGGCGCGGUG-GC-GGG----GGUGGGGa-GAG- -5'
26356 5' -66.2 NC_005345.2 + 13931 0.72 0.079023
Target:  5'- aGCCGC-CCACgGCCgCCUgaacagcaacggggcGCCCCUCUg -3'
miRNA:   3'- -CGGCGcGGUGgCGG-GGG---------------UGGGGAGAg -5'
26356 5' -66.2 NC_005345.2 + 48709 0.7 0.104963
Target:  5'- -aUGCGCCAcggacCCGCCCguacuacguCCGCCCC-CUCg -3'
miRNA:   3'- cgGCGCGGU-----GGCGGG---------GGUGGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 17872 0.71 0.094347
Target:  5'- cGUgGCGCgCAcCCGCCCCCGCaCCCgcgCa -3'
miRNA:   3'- -CGgCGCG-GU-GGCGGGGGUG-GGGagaG- -5'
26356 5' -66.2 NC_005345.2 + 17675 0.72 0.077964
Target:  5'- cGCCGCGCuCGcCCGCCUCacacccgCACCCCggcgcCUCg -3'
miRNA:   3'- -CGGCGCG-GU-GGCGGGG-------GUGGGGa----GAG- -5'
26356 5' -66.2 NC_005345.2 + 45727 0.87 0.004886
Target:  5'- cGCCGCccGCCGCCGCgCCCGCCgCCUCUCu -3'
miRNA:   3'- -CGGCG--CGGUGGCGgGGGUGG-GGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 10955 0.7 0.102208
Target:  5'- uCC-CGCCGCCGCCCUaCGCCCgUC-Cg -3'
miRNA:   3'- cGGcGCGGUGGCGGGG-GUGGGgAGaG- -5'
26356 5' -66.2 NC_005345.2 + 14224 0.8 0.017199
Target:  5'- gGCCcuCGCCGCCGCCCUCGCgcacgCCCUCUCc -3'
miRNA:   3'- -CGGc-GCGGUGGCGGGGGUG-----GGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 5688 0.72 0.076093
Target:  5'- cGCUGCGCCGCgaacuCGCCgCCGUCCCUCg- -3'
miRNA:   3'- -CGGCGCGGUG-----GCGGgGGUGGGGAGag -5'
26356 5' -66.2 NC_005345.2 + 2778 0.7 0.104963
Target:  5'- gGCUGCucGCCGCCGCCCuucgugagCCGCUCCaagagCUCu -3'
miRNA:   3'- -CGGCG--CGGUGGCGGG--------GGUGGGGa----GAG- -5'
26356 5' -66.2 NC_005345.2 + 42620 0.69 0.126285
Target:  5'- cGCCcCGCC-CCGCCCC-GCCCCg--- -3'
miRNA:   3'- -CGGcGCGGuGGCGGGGgUGGGGagag -5'
26356 5' -66.2 NC_005345.2 + 30346 0.77 0.030819
Target:  5'- cCCGCGCCGCCGUCaCCCugCCCg--- -3'
miRNA:   3'- cGGCGCGGUGGCGG-GGGugGGGagag -5'
26356 5' -66.2 NC_005345.2 + 18266 0.74 0.049226
Target:  5'- gGCCGCGCCGUCGCCCgCACCCg---- -3'
miRNA:   3'- -CGGCGCGGUGGCGGGgGUGGGgagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.