Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26358 | 3' | -58 | NC_005345.2 | + | 15954 | 0.97 | 0.003831 |
Target: 5'- uGCUGAGCACGCUG-CCGCGAUCGUCGc -3' miRNA: 3'- -CGACUCGUGCGACgGGCGCUAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 22294 | 0.8 | 0.0687 |
Target: 5'- cGCUGucgGGCACGUUGCCCGCGcUCGgcgCGc -3' miRNA: 3'- -CGAC---UCGUGCGACGGGCGCuAGCa--GC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 30463 | 0.8 | 0.074812 |
Target: 5'- --cGGGCACGCUGCgCGCGAUCugcGUCGc -3' miRNA: 3'- cgaCUCGUGCGACGgGCGCUAG---CAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 5354 | 0.79 | 0.081444 |
Target: 5'- -gUGGGCGCGCUGCCCgGCGAUC-UCc -3' miRNA: 3'- cgACUCGUGCGACGGG-CGCUAGcAGc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 9057 | 0.77 | 0.110562 |
Target: 5'- --cGAGCAggcgcggcgccauUGCUGCCCGCGGUCGaCGg -3' miRNA: 3'- cgaCUCGU-------------GCGACGGGCGCUAGCaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 18228 | 0.77 | 0.11087 |
Target: 5'- -gUGAGCGgGCcGCCgGCGGUCGUCa -3' miRNA: 3'- cgACUCGUgCGaCGGgCGCUAGCAGc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 46234 | 0.75 | 0.15838 |
Target: 5'- cGUUGGGC-CGCUGCCCGguccgcCGAuccgcUCGUCGa -3' miRNA: 3'- -CGACUCGuGCGACGGGC------GCU-----AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 4134 | 0.75 | 0.162713 |
Target: 5'- --cGAGCG-GCUGCUCGCGGcgcUCGUCGa -3' miRNA: 3'- cgaCUCGUgCGACGGGCGCU---AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 28021 | 0.72 | 0.235382 |
Target: 5'- uGCgGAGCGCGCagGCCuCGaCG-UCGUCGa -3' miRNA: 3'- -CGaCUCGUGCGa-CGG-GC-GCuAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 35470 | 0.72 | 0.254134 |
Target: 5'- --aGGGCGaGCUGCCCGaCGG-CGUCGa -3' miRNA: 3'- cgaCUCGUgCGACGGGC-GCUaGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 19856 | 0.71 | 0.302637 |
Target: 5'- --cGAGCGCGCUGCCUcggGCGAccUCGa-- -3' miRNA: 3'- cgaCUCGUGCGACGGG---CGCU--AGCagc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 39768 | 0.71 | 0.302637 |
Target: 5'- gGCUGAacaGCG-GCUGCCCGUaGUgGUCGa -3' miRNA: 3'- -CGACU---CGUgCGACGGGCGcUAgCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 7140 | 0.7 | 0.317746 |
Target: 5'- gGCgGGGCACGUgGCCCGgGAcggGUCGg -3' miRNA: 3'- -CGaCUCGUGCGaCGGGCgCUag-CAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 7515 | 0.7 | 0.333414 |
Target: 5'- cGgUGGGCGUGCUGCCggcgGCGGUCGUgGu -3' miRNA: 3'- -CgACUCGUGCGACGGg---CGCUAGCAgC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 21038 | 0.7 | 0.349642 |
Target: 5'- cCUcGGCACGCgcGCCgGCGAccgccUCGUCGa -3' miRNA: 3'- cGAcUCGUGCGa-CGGgCGCU-----AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 5679 | 0.69 | 0.357964 |
Target: 5'- aGCcGAcCGCGCUGCgCCGCGAacUCGcCGc -3' miRNA: 3'- -CGaCUcGUGCGACG-GGCGCU--AGCaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 41891 | 0.69 | 0.357964 |
Target: 5'- gGCUgucGAGCA-GCUGCUCGUcgucgccuGGUCGUCGc -3' miRNA: 3'- -CGA---CUCGUgCGACGGGCG--------CUAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 17008 | 0.69 | 0.366424 |
Target: 5'- uUUGAGCGgGCUGCCgccgagGCGAUCGcccUCGc -3' miRNA: 3'- cGACUCGUgCGACGGg-----CGCUAGC---AGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 12576 | 0.69 | 0.383753 |
Target: 5'- aCUGucCucuuCGCUGUugcggCCGCGAUCGUCGg -3' miRNA: 3'- cGACucGu---GCGACG-----GGCGCUAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 27614 | 0.68 | 0.398903 |
Target: 5'- cGC-GAGCAcggcgagaucggucCGCUGCUCGCGGUCcGcCGa -3' miRNA: 3'- -CGaCUCGU--------------GCGACGGGCGCUAG-CaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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