miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26358 3' -58 NC_005345.2 + 860 0.68 0.448506
Target:  5'- aCUGAcgaucaGCGCGCacUGCgCGCGGUCGggCGg -3'
miRNA:   3'- cGACU------CGUGCG--ACGgGCGCUAGCa-GC- -5'
26358 3' -58 NC_005345.2 + 4134 0.75 0.162713
Target:  5'- --cGAGCG-GCUGCUCGCGGcgcUCGUCGa -3'
miRNA:   3'- cgaCUCGUgCGACGGGCGCU---AGCAGC- -5'
26358 3' -58 NC_005345.2 + 5354 0.79 0.081444
Target:  5'- -gUGGGCGCGCUGCCCgGCGAUC-UCc -3'
miRNA:   3'- cgACUCGUGCGACGGG-CGCUAGcAGc -5'
26358 3' -58 NC_005345.2 + 5679 0.69 0.357964
Target:  5'- aGCcGAcCGCGCUGCgCCGCGAacUCGcCGc -3'
miRNA:   3'- -CGaCUcGUGCGACG-GGCGCU--AGCaGC- -5'
26358 3' -58 NC_005345.2 + 6587 0.66 0.560982
Target:  5'- --cGGGCAguuCGCUGCUCGuCGAcucgUGUCGg -3'
miRNA:   3'- cgaCUCGU---GCGACGGGC-GCUa---GCAGC- -5'
26358 3' -58 NC_005345.2 + 7140 0.7 0.317746
Target:  5'- gGCgGGGCACGUgGCCCGgGAcggGUCGg -3'
miRNA:   3'- -CGaCUCGUGCGaCGGGCgCUag-CAGC- -5'
26358 3' -58 NC_005345.2 + 7335 0.67 0.488111
Target:  5'- cGCcGAgucGCACGCggugugGCCCGCGGUgG-CGc -3'
miRNA:   3'- -CGaCU---CGUGCGa-----CGGGCGCUAgCaGC- -5'
26358 3' -58 NC_005345.2 + 7515 0.7 0.333414
Target:  5'- cGgUGGGCGUGCUGCCggcgGCGGUCGUgGu -3'
miRNA:   3'- -CgACUCGUGCGACGGg---CGCUAGCAgC- -5'
26358 3' -58 NC_005345.2 + 7587 0.66 0.571668
Target:  5'- cGC-GAGCACgGCgaGCgCGCGcacgacGUCGUCGa -3'
miRNA:   3'- -CGaCUCGUG-CGa-CGgGCGC------UAGCAGC- -5'
26358 3' -58 NC_005345.2 + 9057 0.77 0.110562
Target:  5'- --cGAGCAggcgcggcgccauUGCUGCCCGCGGUCGaCGg -3'
miRNA:   3'- cgaCUCGU-------------GCGACGGGCGCUAGCaGC- -5'
26358 3' -58 NC_005345.2 + 10697 0.66 0.539783
Target:  5'- cGCUGuGCcCGgcCUGuCCUGCGGcagcUCGUCGg -3'
miRNA:   3'- -CGACuCGuGC--GAC-GGGCGCU----AGCAGC- -5'
26358 3' -58 NC_005345.2 + 11221 0.66 0.539783
Target:  5'- gGCaUGGGCAUGaCUGCCCGCGcugccCG-Ca -3'
miRNA:   3'- -CG-ACUCGUGC-GACGGGCGCua---GCaGc -5'
26358 3' -58 NC_005345.2 + 12315 0.66 0.529285
Target:  5'- --cGAGUGCGCgGCgCCGauCGGUCGUCc -3'
miRNA:   3'- cgaCUCGUGCGaCG-GGC--GCUAGCAGc -5'
26358 3' -58 NC_005345.2 + 12576 0.69 0.383753
Target:  5'- aCUGucCucuuCGCUGUugcggCCGCGAUCGUCGg -3'
miRNA:   3'- cGACucGu---GCGACG-----GGCGCUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 12708 0.66 0.539783
Target:  5'- uGgUGGGCgAUGCaGCCCGUGuucgcCGUCGa -3'
miRNA:   3'- -CgACUCG-UGCGaCGGGCGCua---GCAGC- -5'
26358 3' -58 NC_005345.2 + 15476 0.68 0.448506
Target:  5'- gGCUGAcGC-CGUgcucggugcagaUGUCgGCGAUCGUCa -3'
miRNA:   3'- -CGACU-CGuGCG------------ACGGgCGCUAGCAGc -5'
26358 3' -58 NC_005345.2 + 15954 0.97 0.003831
Target:  5'- uGCUGAGCACGCUG-CCGCGAUCGUCGc -3'
miRNA:   3'- -CGACUCGUGCGACgGGCGCUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 15970 0.66 0.529285
Target:  5'- cGCUGccAGUugGCgaUGUgCGCGG-CGUCGa -3'
miRNA:   3'- -CGAC--UCGugCG--ACGgGCGCUaGCAGC- -5'
26358 3' -58 NC_005345.2 + 17008 0.69 0.366424
Target:  5'- uUUGAGCGgGCUGCCgccgagGCGAUCGcccUCGc -3'
miRNA:   3'- cGACUCGUgCGACGGg-----CGCUAGC---AGC- -5'
26358 3' -58 NC_005345.2 + 17035 0.68 0.448506
Target:  5'- --cGAGCACGCcGCCCcacGCGuagaaGUCGg -3'
miRNA:   3'- cgaCUCGUGCGaCGGG---CGCuag--CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.