Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26358 | 3' | -58 | NC_005345.2 | + | 15954 | 0.97 | 0.003831 |
Target: 5'- uGCUGAGCACGCUG-CCGCGAUCGUCGc -3' miRNA: 3'- -CGACUCGUGCGACgGGCGCUAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 12708 | 0.66 | 0.539783 |
Target: 5'- uGgUGGGCgAUGCaGCCCGUGuucgcCGUCGa -3' miRNA: 3'- -CgACUCG-UGCGaCGGGCGCua---GCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 33149 | 0.66 | 0.571668 |
Target: 5'- --cGAGCAC-CUGCUCGCGAugaaccUCGaCGc -3' miRNA: 3'- cgaCUCGUGcGACGGGCGCU------AGCaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 7587 | 0.66 | 0.571668 |
Target: 5'- cGC-GAGCACgGCgaGCgCGCGcacgacGUCGUCGa -3' miRNA: 3'- -CGaCUCGUG-CGa-CGgGCGC------UAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 7140 | 0.7 | 0.317746 |
Target: 5'- gGCgGGGCACGUgGCCCGgGAcggGUCGg -3' miRNA: 3'- -CGaCUCGUGCGaCGGGCgCUag-CAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 5679 | 0.69 | 0.357964 |
Target: 5'- aGCcGAcCGCGCUGCgCCGCGAacUCGcCGc -3' miRNA: 3'- -CGaCUcGUGCGACG-GGCGCU--AGCaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 12576 | 0.69 | 0.383753 |
Target: 5'- aCUGucCucuuCGCUGUugcggCCGCGAUCGUCGg -3' miRNA: 3'- cGACucGu---GCGACG-----GGCGCUAGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 27614 | 0.68 | 0.398903 |
Target: 5'- cGC-GAGCAcggcgagaucggucCGCUGCUCGCGGUCcGcCGa -3' miRNA: 3'- -CGaCUCGU--------------GCGACGGGCGCUAG-CaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 21306 | 0.67 | 0.478051 |
Target: 5'- --cGAGCgACGCcGCCCGUGAgCGgCGg -3' miRNA: 3'- cgaCUCG-UGCGaCGGGCGCUaGCaGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 10697 | 0.66 | 0.539783 |
Target: 5'- cGCUGuGCcCGgcCUGuCCUGCGGcagcUCGUCGg -3' miRNA: 3'- -CGACuCGuGC--GAC-GGGCGCU----AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 48984 | 0.66 | 0.518862 |
Target: 5'- cGCgugugggGAGCACGCcgGCCCGC--UCGg-- -3' miRNA: 3'- -CGa------CUCGUGCGa-CGGGCGcuAGCagc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 15476 | 0.68 | 0.448506 |
Target: 5'- gGCUGAcGC-CGUgcucggugcagaUGUCgGCGAUCGUCa -3' miRNA: 3'- -CGACU-CGuGCG------------ACGGgCGCUAGCAGc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 30463 | 0.8 | 0.074812 |
Target: 5'- --cGGGCACGCUGCgCGCGAUCugcGUCGc -3' miRNA: 3'- cgaCUCGUGCGACGgGCGCUAG---CAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 12315 | 0.66 | 0.529285 |
Target: 5'- --cGAGUGCGCgGCgCCGauCGGUCGUCc -3' miRNA: 3'- cgaCUCGUGCGaCG-GGC--GCUAGCAGc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 46234 | 0.75 | 0.15838 |
Target: 5'- cGUUGGGC-CGCUGCCCGguccgcCGAuccgcUCGUCGa -3' miRNA: 3'- -CGACUCGuGCGACGGGC------GCU-----AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 860 | 0.68 | 0.448506 |
Target: 5'- aCUGAcgaucaGCGCGCacUGCgCGCGGUCGggCGg -3' miRNA: 3'- cGACU------CGUGCG--ACGgGCGCUAGCa-GC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 11221 | 0.66 | 0.539783 |
Target: 5'- gGCaUGGGCAUGaCUGCCCGCGcugccCG-Ca -3' miRNA: 3'- -CG-ACUCGUGC-GACGGGCGCua---GCaGc -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 20508 | 0.66 | 0.560982 |
Target: 5'- --gGGGCuuucCGCUGcCCCGgGAUCGgccugCGg -3' miRNA: 3'- cgaCUCGu---GCGAC-GGGCgCUAGCa----GC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 4134 | 0.75 | 0.162713 |
Target: 5'- --cGAGCG-GCUGCUCGCGGcgcUCGUCGa -3' miRNA: 3'- cgaCUCGUgCGACGGGCGCU---AGCAGC- -5' |
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26358 | 3' | -58 | NC_005345.2 | + | 17008 | 0.69 | 0.366424 |
Target: 5'- uUUGAGCGgGCUGCCgccgagGCGAUCGcccUCGc -3' miRNA: 3'- cGACUCGUgCGACGGg-----CGCUAGC---AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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