miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2636 3' -61.8 NC_001491.2 + 137920 1.12 0.000533
Target:  5'- gUCGCCACCAGCCCCUCUGGCCAGACCa -3'
miRNA:   3'- -AGCGGUGGUCGGGGAGACCGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 34942 0.83 0.06143
Target:  5'- cUCGgCGCgAGCCCCUCUGGUCcGACCu -3'
miRNA:   3'- -AGCgGUGgUCGGGGAGACCGGuCUGG- -5'
2636 3' -61.8 NC_001491.2 + 2253 0.74 0.250303
Target:  5'- -gGCCGCCAGCagcgccgagagucccCCCUUgaGGUCGGACCa -3'
miRNA:   3'- agCGGUGGUCG---------------GGGAGa-CCGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 100110 0.72 0.297618
Target:  5'- gUCGCUaaaACCGGCCCCg-UGGCCGuGuCCg -3'
miRNA:   3'- -AGCGG---UGGUCGGGGagACCGGU-CuGG- -5'
2636 3' -61.8 NC_001491.2 + 35798 0.72 0.31117
Target:  5'- cCGCCGCCgAGCCCCgcgGGUC-GACUg -3'
miRNA:   3'- aGCGGUGG-UCGGGGagaCCGGuCUGG- -5'
2636 3' -61.8 NC_001491.2 + 5305 0.72 0.31812
Target:  5'- aUCGCgGCgAGCCCCg--GaGCCGGGCUg -3'
miRNA:   3'- -AGCGgUGgUCGGGGagaC-CGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 34519 0.71 0.347079
Target:  5'- -gGCCACCAGgcuCCCCg--GGCCcugGGACCc -3'
miRNA:   3'- agCGGUGGUC---GGGGagaCCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 45572 0.71 0.354607
Target:  5'- cUGCgCGCCAGCUCCUCcacaaacGGgUAGACCg -3'
miRNA:   3'- aGCG-GUGGUCGGGGAGa------CCgGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 12095 0.71 0.377875
Target:  5'- cUCGCCGCUggaguuggcGGCCCCcCcGGCCGcGGCUg -3'
miRNA:   3'- -AGCGGUGG---------UCGGGGaGaCCGGU-CUGG- -5'
2636 3' -61.8 NC_001491.2 + 2448 0.71 0.38908
Target:  5'- -gGCCGCCAGCUCCccgaagcgcgcgccgUCccgGGCCgggGGGCCg -3'
miRNA:   3'- agCGGUGGUCGGGG---------------AGa--CCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 128395 0.7 0.410457
Target:  5'- -aGCCGCCGGCCCCUCU---CAGAa- -3'
miRNA:   3'- agCGGUGGUCGGGGAGAccgGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 28574 0.7 0.410457
Target:  5'- aCGCCcCUGGCCCC-CgGGCCAGGu- -3'
miRNA:   3'- aGCGGuGGUCGGGGaGaCCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 147118 0.7 0.410457
Target:  5'- aUCuCCACCAGggaggucuacuaCCCUUCcGGCCAGGCa -3'
miRNA:   3'- -AGcGGUGGUC------------GGGGAGaCCGGUCUGg -5'
2636 3' -61.8 NC_001491.2 + 92269 0.7 0.410457
Target:  5'- -gGCCauGCCGGCCaCC-CUGGCuCuGGCCg -3'
miRNA:   3'- agCGG--UGGUCGG-GGaGACCG-GuCUGG- -5'
2636 3' -61.8 NC_001491.2 + 2838 0.7 0.436009
Target:  5'- -gGCCGCCGGCUCCaggGGCuCGGAgCg -3'
miRNA:   3'- agCGGUGGUCGGGGagaCCG-GUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 83414 0.69 0.444728
Target:  5'- gUCGCUGucuucCCGGCgCCUUgGGCCGGACg -3'
miRNA:   3'- -AGCGGU-----GGUCGgGGAGaCCGGUCUGg -5'
2636 3' -61.8 NC_001491.2 + 51304 0.69 0.444728
Target:  5'- cUCGCCuucgcggcucuGCCGGCCCCgcucUUGGCgGGgaaGCCu -3'
miRNA:   3'- -AGCGG-----------UGGUCGGGGa---GACCGgUC---UGG- -5'
2636 3' -61.8 NC_001491.2 + 19419 0.69 0.444728
Target:  5'- gUCGCCACCcccAGCUCUaugaugggucggUCUGGCgGGAgCu -3'
miRNA:   3'- -AGCGGUGG---UCGGGG------------AGACCGgUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 33242 0.69 0.453544
Target:  5'- cUGCCACacgCGGCCgCCUCggUGGCCAuGAgCCg -3'
miRNA:   3'- aGCGGUG---GUCGG-GGAG--ACCGGU-CU-GG- -5'
2636 3' -61.8 NC_001491.2 + 35954 0.69 0.480544
Target:  5'- -gGCC-CgAGCCCCggCgUGGCCcAGGCCc -3'
miRNA:   3'- agCGGuGgUCGGGGa-G-ACCGG-UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.