miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2636 3' -61.8 NC_001491.2 + 91800 0.69 0.489718
Target:  5'- -aGCCGCUgcAGCaCCUCUGGgCAG-CCg -3'
miRNA:   3'- agCGGUGG--UCGgGGAGACCgGUCuGG- -5'
2636 3' -61.8 NC_001491.2 + 4533 0.68 0.498973
Target:  5'- cCGUCugCggGGCCuCCUC-GGCCGGugCc -3'
miRNA:   3'- aGCGGugG--UCGG-GGAGaCCGGUCugG- -5'
2636 3' -61.8 NC_001491.2 + 35325 0.68 0.508305
Target:  5'- cUCaCCuCCAGCaCCCUCUucgGGCCcGGACUg -3'
miRNA:   3'- -AGcGGuGGUCG-GGGAGA---CCGG-UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 10200 0.68 0.512058
Target:  5'- aCGCgGCCAGCCCCaugcccgucuuccacUC-GG-CGGACCc -3'
miRNA:   3'- aGCGgUGGUCGGGG---------------AGaCCgGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 10544 0.68 0.517709
Target:  5'- -gGCCGCaAGCuCCCUCUccagcugcccucGGCCcaucGGACCg -3'
miRNA:   3'- agCGGUGgUCG-GGGAGA------------CCGG----UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 111688 0.68 0.53672
Target:  5'- -gGCCACCAGUCUUUC-GGUCAGGu- -3'
miRNA:   3'- agCGGUGGUCGGGGAGaCCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 34038 0.67 0.555967
Target:  5'- cUCGCCcggcgGCgAGCCCUUCUccGGCUccgcGGCCg -3'
miRNA:   3'- -AGCGG-----UGgUCGGGGAGA--CCGGu---CUGG- -5'
2636 3' -61.8 NC_001491.2 + 16210 0.67 0.565666
Target:  5'- -gGCCGCCGaugcGCCCCcCUGuCCGGAgCg -3'
miRNA:   3'- agCGGUGGU----CGGGGaGACcGGUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 33377 0.67 0.565666
Target:  5'- cUCGCCGCCguGGCCggCUacccGGcCCAGGCCg -3'
miRNA:   3'- -AGCGGUGG--UCGGg-GAga--CC-GGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 8634 0.67 0.565666
Target:  5'- aUCcCCGCgGGCCCUgcgcccguacCUGGCCcggGGGCCa -3'
miRNA:   3'- -AGcGGUGgUCGGGGa---------GACCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 43154 0.67 0.565666
Target:  5'- -gGCCACCAGCCCCcacgGGCaCA-ACUu -3'
miRNA:   3'- agCGGUGGUCGGGGaga-CCG-GUcUGG- -5'
2636 3' -61.8 NC_001491.2 + 11913 0.67 0.575409
Target:  5'- -gGCCACCAcCCCCUCgaccggcacgcGGCaCGGcACCu -3'
miRNA:   3'- agCGGUGGUcGGGGAGa----------CCG-GUC-UGG- -5'
2636 3' -61.8 NC_001491.2 + 4681 0.67 0.579317
Target:  5'- -aGCCAUCcccgcgggcgguucgGGCCUCUCcagcgucuUGGCCAGAUUg -3'
miRNA:   3'- agCGGUGG---------------UCGGGGAG--------ACCGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 90540 0.67 0.585189
Target:  5'- aUCGUgGCUcugaaaaaCCCCUCUGGCCcaGCCa -3'
miRNA:   3'- -AGCGgUGGuc------GGGGAGACCGGucUGG- -5'
2636 3' -61.8 NC_001491.2 + 34406 0.67 0.585189
Target:  5'- -aGCCGgCGGCCCa---GGCCGGAgCCu -3'
miRNA:   3'- agCGGUgGUCGGGgagaCCGGUCU-GG- -5'
2636 3' -61.8 NC_001491.2 + 114238 0.67 0.585189
Target:  5'- aUUGCCAac--CCCCUCUgGGCCcuGGCCa -3'
miRNA:   3'- -AGCGGUggucGGGGAGA-CCGGu-CUGG- -5'
2636 3' -61.8 NC_001491.2 + 11488 0.67 0.595001
Target:  5'- -gGCUGCCuGGCCCCUCUggggugggGGUCAGGg- -3'
miRNA:   3'- agCGGUGG-UCGGGGAGA--------CCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 141195 0.67 0.595001
Target:  5'- cUCGCUgGCUGGCCgCggCUGGauaCAGACCa -3'
miRNA:   3'- -AGCGG-UGGUCGGgGa-GACCg--GUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 84028 0.67 0.604838
Target:  5'- -gGCgGCUggcGCCCCUCUGGUUucaggGGACUa -3'
miRNA:   3'- agCGgUGGu--CGGGGAGACCGG-----UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 64509 0.67 0.608779
Target:  5'- gCGCCGCCAcacgucucuggggguGUCuCCUCcGGCCAcGGCg -3'
miRNA:   3'- aGCGGUGGU---------------CGG-GGAGaCCGGU-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.