miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2636 3' -61.8 NC_001491.2 + 33377 0.67 0.565666
Target:  5'- cUCGCCGCCguGGCCggCUacccGGcCCAGGCCg -3'
miRNA:   3'- -AGCGGUGG--UCGGg-GAga--CC-GGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 34038 0.67 0.555967
Target:  5'- cUCGCCcggcgGCgAGCCCUUCUccGGCUccgcGGCCg -3'
miRNA:   3'- -AGCGG-----UGgUCGGGGAGA--CCGGu---CUGG- -5'
2636 3' -61.8 NC_001491.2 + 34406 0.67 0.585189
Target:  5'- -aGCCGgCGGCCCa---GGCCGGAgCCu -3'
miRNA:   3'- agCGGUgGUCGGGgagaCCGGUCU-GG- -5'
2636 3' -61.8 NC_001491.2 + 34519 0.71 0.347079
Target:  5'- -gGCCACCAGgcuCCCCg--GGCCcugGGACCc -3'
miRNA:   3'- agCGGUGGUC---GGGGagaCCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 34942 0.83 0.06143
Target:  5'- cUCGgCGCgAGCCCCUCUGGUCcGACCu -3'
miRNA:   3'- -AGCgGUGgUCGGGGAGACCGGuCUGG- -5'
2636 3' -61.8 NC_001491.2 + 35325 0.68 0.508305
Target:  5'- cUCaCCuCCAGCaCCCUCUucgGGCCcGGACUg -3'
miRNA:   3'- -AGcGGuGGUCG-GGGAGA---CCGG-UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 35798 0.72 0.31117
Target:  5'- cCGCCGCCgAGCCCCgcgGGUC-GACUg -3'
miRNA:   3'- aGCGGUGG-UCGGGGagaCCGGuCUGG- -5'
2636 3' -61.8 NC_001491.2 + 35954 0.69 0.480544
Target:  5'- -gGCC-CgAGCCCCggCgUGGCCcAGGCCc -3'
miRNA:   3'- agCGGuGgUCGGGGa-G-ACCGG-UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 39442 0.66 0.650228
Target:  5'- -aGCCGCgGGCCCCagucgccugggugCUGGCCc--CCg -3'
miRNA:   3'- agCGGUGgUCGGGGa------------GACCGGucuGG- -5'
2636 3' -61.8 NC_001491.2 + 43154 0.67 0.565666
Target:  5'- -gGCCACCAGCCCCcacgGGCaCA-ACUu -3'
miRNA:   3'- agCGGUGGUCGGGGaga-CCG-GUcUGG- -5'
2636 3' -61.8 NC_001491.2 + 45572 0.71 0.354607
Target:  5'- cUGCgCGCCAGCUCCUCcacaaacGGgUAGACCg -3'
miRNA:   3'- aGCG-GUGGUCGGGGAGa------CCgGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 51304 0.69 0.444728
Target:  5'- cUCGCCuucgcggcucuGCCGGCCCCgcucUUGGCgGGgaaGCCu -3'
miRNA:   3'- -AGCGG-----------UGGUCGGGGa---GACCGgUC---UGG- -5'
2636 3' -61.8 NC_001491.2 + 56667 0.66 0.634437
Target:  5'- aUGCCAugguuuccguCCAgGCCCCgaaUCUGGCC--ACCg -3'
miRNA:   3'- aGCGGU----------GGU-CGGGG---AGACCGGucUGG- -5'
2636 3' -61.8 NC_001491.2 + 58533 0.66 0.644309
Target:  5'- aUCGCUAgCAcggcGUCCCUgacgCUGGCCAGGg- -3'
miRNA:   3'- -AGCGGUgGU----CGGGGA----GACCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 64509 0.67 0.608779
Target:  5'- gCGCCGCCAcacgucucuggggguGUCuCCUCcGGCCAcGGCg -3'
miRNA:   3'- aGCGGUGGU---------------CGG-GGAGaCCGGU-CUGg -5'
2636 3' -61.8 NC_001491.2 + 83414 0.69 0.444728
Target:  5'- gUCGCUGucuucCCGGCgCCUUgGGCCGGACg -3'
miRNA:   3'- -AGCGGU-----GGUCGgGGAGaCCGGUCUGg -5'
2636 3' -61.8 NC_001491.2 + 84028 0.67 0.604838
Target:  5'- -gGCgGCUggcGCCCCUCUGGUUucaggGGACUa -3'
miRNA:   3'- agCGgUGGu--CGGGGAGACCGG-----UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 90540 0.67 0.585189
Target:  5'- aUCGUgGCUcugaaaaaCCCCUCUGGCCcaGCCa -3'
miRNA:   3'- -AGCGgUGGuc------GGGGAGACCGGucUGG- -5'
2636 3' -61.8 NC_001491.2 + 91800 0.69 0.489718
Target:  5'- -aGCCGCUgcAGCaCCUCUGGgCAG-CCg -3'
miRNA:   3'- agCGGUGG--UCGgGGAGACCgGUCuGG- -5'
2636 3' -61.8 NC_001491.2 + 92269 0.7 0.410457
Target:  5'- -gGCCauGCCGGCCaCC-CUGGCuCuGGCCg -3'
miRNA:   3'- agCGG--UGGUCGG-GGaGACCG-GuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.