miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2636 3' -61.8 NC_001491.2 + 2253 0.74 0.250303
Target:  5'- -gGCCGCCAGCagcgccgagagucccCCCUUgaGGUCGGACCa -3'
miRNA:   3'- agCGGUGGUCG---------------GGGAGa-CCGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 2448 0.71 0.38908
Target:  5'- -gGCCGCCAGCUCCccgaagcgcgcgccgUCccgGGCCgggGGGCCg -3'
miRNA:   3'- agCGGUGGUCGGGG---------------AGa--CCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 2585 0.66 0.634437
Target:  5'- cCGCCACCAGCUCggggGGacagUAGGCCg -3'
miRNA:   3'- aGCGGUGGUCGGGgagaCCg---GUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 2838 0.7 0.436009
Target:  5'- -gGCCGCCGGCUCCaggGGCuCGGAgCg -3'
miRNA:   3'- agCGGUGGUCGGGGagaCCG-GUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 4533 0.68 0.498973
Target:  5'- cCGUCugCggGGCCuCCUC-GGCCGGugCc -3'
miRNA:   3'- aGCGGugG--UCGG-GGAGaCCGGUCugG- -5'
2636 3' -61.8 NC_001491.2 + 4681 0.67 0.579317
Target:  5'- -aGCCAUCcccgcgggcgguucgGGCCUCUCcagcgucuUGGCCAGAUUg -3'
miRNA:   3'- agCGGUGG---------------UCGGGGAG--------ACCGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 5305 0.72 0.31812
Target:  5'- aUCGCgGCgAGCCCCg--GaGCCGGGCUg -3'
miRNA:   3'- -AGCGgUGgUCGGGGagaC-CGGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 8634 0.67 0.565666
Target:  5'- aUCcCCGCgGGCCCUgcgcccguacCUGGCCcggGGGCCa -3'
miRNA:   3'- -AGcGGUGgUCGGGGa---------GACCGG---UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 10200 0.68 0.512058
Target:  5'- aCGCgGCCAGCCCCaugcccgucuuccacUC-GG-CGGACCc -3'
miRNA:   3'- aGCGgUGGUCGGGG---------------AGaCCgGUCUGG- -5'
2636 3' -61.8 NC_001491.2 + 10544 0.68 0.517709
Target:  5'- -gGCCGCaAGCuCCCUCUccagcugcccucGGCCcaucGGACCg -3'
miRNA:   3'- agCGGUGgUCG-GGGAGA------------CCGG----UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 11488 0.67 0.595001
Target:  5'- -gGCUGCCuGGCCCCUCUggggugggGGUCAGGg- -3'
miRNA:   3'- agCGGUGG-UCGGGGAGA--------CCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 11913 0.67 0.575409
Target:  5'- -gGCCACCAcCCCCUCgaccggcacgcGGCaCGGcACCu -3'
miRNA:   3'- agCGGUGGUcGGGGAGa----------CCG-GUC-UGG- -5'
2636 3' -61.8 NC_001491.2 + 12095 0.71 0.377875
Target:  5'- cUCGCCGCUggaguuggcGGCCCCcCcGGCCGcGGCUg -3'
miRNA:   3'- -AGCGGUGG---------UCGGGGaGaCCGGU-CUGG- -5'
2636 3' -61.8 NC_001491.2 + 16210 0.67 0.565666
Target:  5'- -gGCCGCCGaugcGCCCCcCUGuCCGGAgCg -3'
miRNA:   3'- agCGGUGGU----CGGGGaGACcGGUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 19419 0.69 0.444728
Target:  5'- gUCGCCACCcccAGCUCUaugaugggucggUCUGGCgGGAgCu -3'
miRNA:   3'- -AGCGGUGG---UCGGGG------------AGACCGgUCUgG- -5'
2636 3' -61.8 NC_001491.2 + 28574 0.7 0.410457
Target:  5'- aCGCCcCUGGCCCC-CgGGCCAGGu- -3'
miRNA:   3'- aGCGGuGGUCGGGGaGaCCGGUCUgg -5'
2636 3' -61.8 NC_001491.2 + 31507 0.66 0.654172
Target:  5'- cCGCCACCGGCCaCCc---GCCA-ACCu -3'
miRNA:   3'- aGCGGUGGUCGG-GGagacCGGUcUGG- -5'
2636 3' -61.8 NC_001491.2 + 32512 0.66 0.654172
Target:  5'- gCGuCCGCgaGGCCaaUCUGGCCAaGACg -3'
miRNA:   3'- aGC-GGUGg-UCGGggAGACCGGU-CUGg -5'
2636 3' -61.8 NC_001491.2 + 32577 0.66 0.644309
Target:  5'- cCGCCggGCCGGagCCCUCaccGGCUccccaaGGACCa -3'
miRNA:   3'- aGCGG--UGGUCg-GGGAGa--CCGG------UCUGG- -5'
2636 3' -61.8 NC_001491.2 + 33242 0.69 0.453544
Target:  5'- cUGCCACacgCGGCCgCCUCggUGGCCAuGAgCCg -3'
miRNA:   3'- aGCGGUG---GUCGG-GGAG--ACCGGU-CU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.