Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2636 | 3' | -61.8 | NC_001491.2 | + | 147118 | 0.7 | 0.410457 |
Target: 5'- aUCuCCACCAGggaggucuacuaCCCUUCcGGCCAGGCa -3' miRNA: 3'- -AGcGGUGGUC------------GGGGAGaCCGGUCUGg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 141195 | 0.67 | 0.595001 |
Target: 5'- cUCGCUgGCUGGCCgCggCUGGauaCAGACCa -3' miRNA: 3'- -AGCGG-UGGUCGGgGa-GACCg--GUCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 140352 | 0.66 | 0.648255 |
Target: 5'- cCGCCguuaucggucacagcACCGGCCgCUCcGGUuuGACCu -3' miRNA: 3'- aGCGG---------------UGGUCGGgGAGaCCGguCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 137920 | 1.12 | 0.000533 |
Target: 5'- gUCGCCACCAGCCCCUCUGGCCAGACCa -3' miRNA: 3'- -AGCGGUGGUCGGGGAGACCGGUCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 132986 | 0.66 | 0.634437 |
Target: 5'- aUUGCCACCAGUUCUUCUuugguguaGCCuGGACUc -3' miRNA: 3'- -AGCGGUGGUCGGGGAGAc-------CGG-UCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 128395 | 0.7 | 0.410457 |
Target: 5'- -aGCCGCCGGCCCCUCU---CAGAa- -3' miRNA: 3'- agCGGUGGUCGGGGAGAccgGUCUgg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 114238 | 0.67 | 0.585189 |
Target: 5'- aUUGCCAac--CCCCUCUgGGCCcuGGCCa -3' miRNA: 3'- -AGCGGUggucGGGGAGA-CCGGu-CUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 111688 | 0.68 | 0.53672 |
Target: 5'- -gGCCACCAGUCUUUC-GGUCAGGu- -3' miRNA: 3'- agCGGUGGUCGGGGAGaCCGGUCUgg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 100110 | 0.72 | 0.297618 |
Target: 5'- gUCGCUaaaACCGGCCCCg-UGGCCGuGuCCg -3' miRNA: 3'- -AGCGG---UGGUCGGGGagACCGGU-CuGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 98961 | 0.66 | 0.614694 |
Target: 5'- aCGCCgGCCuGGUCCCcCUGGgCGGcuGCCg -3' miRNA: 3'- aGCGG-UGG-UCGGGGaGACCgGUC--UGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 92269 | 0.7 | 0.410457 |
Target: 5'- -gGCCauGCCGGCCaCC-CUGGCuCuGGCCg -3' miRNA: 3'- agCGG--UGGUCGG-GGaGACCG-GuCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 91800 | 0.69 | 0.489718 |
Target: 5'- -aGCCGCUgcAGCaCCUCUGGgCAG-CCg -3' miRNA: 3'- agCGGUGG--UCGgGGAGACCgGUCuGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 90540 | 0.67 | 0.585189 |
Target: 5'- aUCGUgGCUcugaaaaaCCCCUCUGGCCcaGCCa -3' miRNA: 3'- -AGCGgUGGuc------GGGGAGACCGGucUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 84028 | 0.67 | 0.604838 |
Target: 5'- -gGCgGCUggcGCCCCUCUGGUUucaggGGACUa -3' miRNA: 3'- agCGgUGGu--CGGGGAGACCGG-----UCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 83414 | 0.69 | 0.444728 |
Target: 5'- gUCGCUGucuucCCGGCgCCUUgGGCCGGACg -3' miRNA: 3'- -AGCGGU-----GGUCGgGGAGaCCGGUCUGg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 64509 | 0.67 | 0.608779 |
Target: 5'- gCGCCGCCAcacgucucuggggguGUCuCCUCcGGCCAcGGCg -3' miRNA: 3'- aGCGGUGGU---------------CGG-GGAGaCCGGU-CUGg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 58533 | 0.66 | 0.644309 |
Target: 5'- aUCGCUAgCAcggcGUCCCUgacgCUGGCCAGGg- -3' miRNA: 3'- -AGCGGUgGU----CGGGGA----GACCGGUCUgg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 56667 | 0.66 | 0.634437 |
Target: 5'- aUGCCAugguuuccguCCAgGCCCCgaaUCUGGCC--ACCg -3' miRNA: 3'- aGCGGU----------GGU-CGGGG---AGACCGGucUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 51304 | 0.69 | 0.444728 |
Target: 5'- cUCGCCuucgcggcucuGCCGGCCCCgcucUUGGCgGGgaaGCCu -3' miRNA: 3'- -AGCGG-----------UGGUCGGGGa---GACCGgUC---UGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 45572 | 0.71 | 0.354607 |
Target: 5'- cUGCgCGCCAGCUCCUCcacaaacGGgUAGACCg -3' miRNA: 3'- aGCG-GUGGUCGGGGAGa------CCgGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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