Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2636 | 3' | -61.8 | NC_001491.2 | + | 43154 | 0.67 | 0.565666 |
Target: 5'- -gGCCACCAGCCCCcacgGGCaCA-ACUu -3' miRNA: 3'- agCGGUGGUCGGGGaga-CCG-GUcUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 16210 | 0.67 | 0.565666 |
Target: 5'- -gGCCGCCGaugcGCCCCcCUGuCCGGAgCg -3' miRNA: 3'- agCGGUGGU----CGGGGaGACcGGUCUgG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 33377 | 0.67 | 0.565666 |
Target: 5'- cUCGCCGCCguGGCCggCUacccGGcCCAGGCCg -3' miRNA: 3'- -AGCGGUGG--UCGGg-GAga--CC-GGUCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 34038 | 0.67 | 0.555967 |
Target: 5'- cUCGCCcggcgGCgAGCCCUUCUccGGCUccgcGGCCg -3' miRNA: 3'- -AGCGG-----UGgUCGGGGAGA--CCGGu---CUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 111688 | 0.68 | 0.53672 |
Target: 5'- -gGCCACCAGUCUUUC-GGUCAGGu- -3' miRNA: 3'- agCGGUGGUCGGGGAGaCCGGUCUgg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 10544 | 0.68 | 0.517709 |
Target: 5'- -gGCCGCaAGCuCCCUCUccagcugcccucGGCCcaucGGACCg -3' miRNA: 3'- agCGGUGgUCG-GGGAGA------------CCGG----UCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 10200 | 0.68 | 0.512058 |
Target: 5'- aCGCgGCCAGCCCCaugcccgucuuccacUC-GG-CGGACCc -3' miRNA: 3'- aGCGgUGGUCGGGG---------------AGaCCgGUCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 35325 | 0.68 | 0.508305 |
Target: 5'- cUCaCCuCCAGCaCCCUCUucgGGCCcGGACUg -3' miRNA: 3'- -AGcGGuGGUCG-GGGAGA---CCGG-UCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 4533 | 0.68 | 0.498973 |
Target: 5'- cCGUCugCggGGCCuCCUC-GGCCGGugCc -3' miRNA: 3'- aGCGGugG--UCGG-GGAGaCCGGUCugG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 91800 | 0.69 | 0.489718 |
Target: 5'- -aGCCGCUgcAGCaCCUCUGGgCAG-CCg -3' miRNA: 3'- agCGGUGG--UCGgGGAGACCgGUCuGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 35954 | 0.69 | 0.480544 |
Target: 5'- -gGCC-CgAGCCCCggCgUGGCCcAGGCCc -3' miRNA: 3'- agCGGuGgUCGGGGa-G-ACCGG-UCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 33242 | 0.69 | 0.453544 |
Target: 5'- cUGCCACacgCGGCCgCCUCggUGGCCAuGAgCCg -3' miRNA: 3'- aGCGGUG---GUCGG-GGAG--ACCGGU-CU-GG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 83414 | 0.69 | 0.444728 |
Target: 5'- gUCGCUGucuucCCGGCgCCUUgGGCCGGACg -3' miRNA: 3'- -AGCGGU-----GGUCGgGGAGaCCGGUCUGg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 51304 | 0.69 | 0.444728 |
Target: 5'- cUCGCCuucgcggcucuGCCGGCCCCgcucUUGGCgGGgaaGCCu -3' miRNA: 3'- -AGCGG-----------UGGUCGGGGa---GACCGgUC---UGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 19419 | 0.69 | 0.444728 |
Target: 5'- gUCGCCACCcccAGCUCUaugaugggucggUCUGGCgGGAgCu -3' miRNA: 3'- -AGCGGUGG---UCGGGG------------AGACCGgUCUgG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 2838 | 0.7 | 0.436009 |
Target: 5'- -gGCCGCCGGCUCCaggGGCuCGGAgCg -3' miRNA: 3'- agCGGUGGUCGGGGagaCCG-GUCUgG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 147118 | 0.7 | 0.410457 |
Target: 5'- aUCuCCACCAGggaggucuacuaCCCUUCcGGCCAGGCa -3' miRNA: 3'- -AGcGGUGGUC------------GGGGAGaCCGGUCUGg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 128395 | 0.7 | 0.410457 |
Target: 5'- -aGCCGCCGGCCCCUCU---CAGAa- -3' miRNA: 3'- agCGGUGGUCGGGGAGAccgGUCUgg -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 92269 | 0.7 | 0.410457 |
Target: 5'- -gGCCauGCCGGCCaCC-CUGGCuCuGGCCg -3' miRNA: 3'- agCGG--UGGUCGG-GGaGACCG-GuCUGG- -5' |
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2636 | 3' | -61.8 | NC_001491.2 | + | 28574 | 0.7 | 0.410457 |
Target: 5'- aCGCCcCUGGCCCC-CgGGCCAGGu- -3' miRNA: 3'- aGCGGuGGUCGGGGaGaCCGGUCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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