miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 3' -56.7 NC_005345.2 + 18038 1.05 0.001179
Target:  5'- uACGAACCCGUGCACCUCGAACCCGAAc -3'
miRNA:   3'- -UGCUUGGGCACGUGGAGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 45188 0.78 0.109663
Target:  5'- gACGAACCCGgggGuCGCCUCGAcguacagacGCCCGGu -3'
miRNA:   3'- -UGCUUGGGCa--C-GUGGAGCU---------UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 12523 0.76 0.149186
Target:  5'- gGCGAACCCGcGCAgCggcaCGAGCCCGGc -3'
miRNA:   3'- -UGCUUGGGCaCGUgGa---GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 39987 0.75 0.16653
Target:  5'- cACGAccgGCCCGUGCACCcgCGccgucAACCCGGc -3'
miRNA:   3'- -UGCU---UGGGCACGUGGa-GC-----UUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17365 0.74 0.190738
Target:  5'- gGCGAACCCGaGUGCgUCGAccccgcACCCGAGa -3'
miRNA:   3'- -UGCUUGGGCaCGUGgAGCU------UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 39183 0.74 0.201258
Target:  5'- gGCGGACCCGca-GCC-CGAACCCGGg -3'
miRNA:   3'- -UGCUUGGGCacgUGGaGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17072 0.73 0.223815
Target:  5'- cCGAGCCCGagGCcgaGCCcgaggUCGAGCCCGAAc -3'
miRNA:   3'- uGCUUGGGCa-CG---UGG-----AGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 36553 0.73 0.223815
Target:  5'- cCGAGCUCGUGCGCUUCGGgggcggcgACaCCGAGg -3'
miRNA:   3'- uGCUUGGGCACGUGGAGCU--------UG-GGCUU- -5'
26364 3' -56.7 NC_005345.2 + 17028 0.73 0.248484
Target:  5'- gGCGAucgcccucgcACCCGcGCugCcCGAGCCCGAGg -3'
miRNA:   3'- -UGCU----------UGGGCaCGugGaGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 31069 0.73 0.248485
Target:  5'- uGCGAACCCGcGCACC-CGGuCCCaGAGg -3'
miRNA:   3'- -UGCUUGGGCaCGUGGaGCUuGGG-CUU- -5'
26364 3' -56.7 NC_005345.2 + 5641 0.72 0.261641
Target:  5'- cGCcGACCCGaucgGCACCgcccggCGGGCCCGGAc -3'
miRNA:   3'- -UGcUUGGGCa---CGUGGa-----GCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 32321 0.72 0.261641
Target:  5'- cACGAGCCgGUcCugCUCGAACCgGAu -3'
miRNA:   3'- -UGCUUGGgCAcGugGAGCUUGGgCUu -5'
26364 3' -56.7 NC_005345.2 + 16942 0.72 0.26843
Target:  5'- gACGAGCCCG-GguUgaCGAGCCCGAc -3'
miRNA:   3'- -UGCUUGGGCaCguGgaGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 16302 0.72 0.27536
Target:  5'- uGCGGcaGCCCGauCGCCUCGAACUCGGc -3'
miRNA:   3'- -UGCU--UGGGCacGUGGAGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 40201 0.72 0.289647
Target:  5'- uCGAGCCCGaGCACC-CGcAGCCCGc- -3'
miRNA:   3'- uGCUUGGGCaCGUGGaGC-UUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 19221 0.72 0.289647
Target:  5'- uGCGAGCaCC-UGCGCCUUGAACgUGAGg -3'
miRNA:   3'- -UGCUUG-GGcACGUGGAGCUUGgGCUU- -5'
26364 3' -56.7 NC_005345.2 + 43547 0.71 0.297006
Target:  5'- cACGAGCCCG-GCGCCccacggcaCGAGCgCGAAg -3'
miRNA:   3'- -UGCUUGGGCaCGUGGa-------GCUUGgGCUU- -5'
26364 3' -56.7 NC_005345.2 + 37536 0.71 0.303753
Target:  5'- gGCGGGCugugauccccucgCCG-GCACCUCG-GCCCGAGg -3'
miRNA:   3'- -UGCUUG-------------GGCaCGUGGAGCuUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 31765 0.71 0.304509
Target:  5'- cGCGGACCaccgCGgacgGCACCgaguaCGAGCCCGAc -3'
miRNA:   3'- -UGCUUGG----GCa---CGUGGa----GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 18993 0.71 0.31448
Target:  5'- cCGAGCCuCGgcccgagcggggcgGCGCCUCGAcgucgccGCCCGAGc -3'
miRNA:   3'- uGCUUGG-GCa-------------CGUGGAGCU-------UGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.