miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 3' -56.7 NC_005345.2 + 1827 0.66 0.590603
Target:  5'- uGCGAccACUcugCGUGCACCaaGuGCCCGAGg -3'
miRNA:   3'- -UGCU--UGG---GCACGUGGagCuUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 2041 0.66 0.579655
Target:  5'- aGCGGGCCCGgcgcgGC-CCggCGGGCCgCGGc -3'
miRNA:   3'- -UGCUUGGGCa----CGuGGa-GCUUGG-GCUu -5'
26364 3' -56.7 NC_005345.2 + 2363 0.66 0.590604
Target:  5'- gGCGcAGCCCGgucGCgACCUCGcgGGCCCa-- -3'
miRNA:   3'- -UGC-UUGGGCa--CG-UGGAGC--UUGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 3164 0.67 0.515157
Target:  5'- gGCGAGCUCGUcgggGUGCCgggucggCGAGCCCuGAGg -3'
miRNA:   3'- -UGCUUGGGCA----CGUGGa------GCUUGGG-CUU- -5'
26364 3' -56.7 NC_005345.2 + 4264 0.7 0.387475
Target:  5'- gGCGAACaCCGgcggugcggGCAgCUCGGGCUCGGg -3'
miRNA:   3'- -UGCUUG-GGCa--------CGUgGAGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 4331 0.66 0.59719
Target:  5'- uGCGccccACCCGcgaGCACCUCGcgaagaaccccauGCCCGAGc -3'
miRNA:   3'- -UGCu---UGGGCa--CGUGGAGCu------------UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 5641 0.72 0.261641
Target:  5'- cGCcGACCCGaucgGCACCgcccggCGGGCCCGGAc -3'
miRNA:   3'- -UGcUUGGGCa---CGUGGa-----GCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 6143 0.71 0.327889
Target:  5'- uGCGGACCCGgucGCACCggcucaUCGAgguccccuccgGCCCGGc -3'
miRNA:   3'- -UGCUUGGGCa--CGUGG------AGCU-----------UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 6491 0.67 0.525727
Target:  5'- gGCGAGCCCGagGCguggacGCCgcaGGGCUCGAAg -3'
miRNA:   3'- -UGCUUGGGCa-CG------UGGag-CUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 6574 0.67 0.525728
Target:  5'- gGCGGACCCGUgacgggcaguucGCugCUCGucGACUCGu- -3'
miRNA:   3'- -UGCUUGGGCA------------CGugGAGC--UUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 7261 0.66 0.579655
Target:  5'- gACGAGCa---GCugCUCGAcaGCCCGGAc -3'
miRNA:   3'- -UGCUUGggcaCGugGAGCU--UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 8589 0.66 0.590603
Target:  5'- gACGuGAUCCGU--GCCUCGGucgGCCCGAu -3'
miRNA:   3'- -UGC-UUGGGCAcgUGGAGCU---UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 9510 0.69 0.39655
Target:  5'- cGCGGGCCCuGUGCGCgcaGAccgACCCGGAg -3'
miRNA:   3'- -UGCUUGGG-CACGUGgagCU---UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 12523 0.76 0.149186
Target:  5'- gGCGAACCCGcGCAgCggcaCGAGCCCGGc -3'
miRNA:   3'- -UGCUUGGGCaCGUgGa---GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 12713 0.67 0.515156
Target:  5'- gGCGAugcaGCCCGUGUucGCCgUCGAgaucGCCCa-- -3'
miRNA:   3'- -UGCU----UGGGCACG--UGG-AGCU----UGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 13473 0.67 0.515157
Target:  5'- gACGAACCCG-GCgACCUUGu-CCCa-- -3'
miRNA:   3'- -UGCUUGGGCaCG-UGGAGCuuGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 14717 0.71 0.335972
Target:  5'- gGCGAGCUCGUGCugCacacCGAGgCCGGc -3'
miRNA:   3'- -UGCUUGGGCACGugGa---GCUUgGGCUu -5'
26364 3' -56.7 NC_005345.2 + 14963 0.69 0.415104
Target:  5'- gGCGuucACCCGaGCGCCUUGAAUCCc-- -3'
miRNA:   3'- -UGCu--UGGGCaCGUGGAGCUUGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 16114 0.67 0.525727
Target:  5'- uCGAGCCgGaccGCACCccgcggcCGAGCCCGAu -3'
miRNA:   3'- uGCUUGGgCa--CGUGGa------GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 16301 0.68 0.494282
Target:  5'- -gGAgcACCCGUGCACCauccCGAGCUCa-- -3'
miRNA:   3'- ugCU--UGGGCACGUGGa---GCUUGGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.