miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 3' -56.7 NC_005345.2 + 18038 1.05 0.001179
Target:  5'- uACGAACCCGUGCACCUCGAACCCGAAc -3'
miRNA:   3'- -UGCUUGGGCACGUGGAGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 45907 0.68 0.453756
Target:  5'- cACGAgcGCCgCGUGCACagugCGcuGCCCGAAc -3'
miRNA:   3'- -UGCU--UGG-GCACGUGga--GCu-UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 25896 0.68 0.48399
Target:  5'- cCGAGCgaGUGCAUCgUCGAguacgACCCGGAg -3'
miRNA:   3'- uGCUUGggCACGUGG-AGCU-----UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 20881 0.66 0.601587
Target:  5'- cGCGAGCCCGcaaaGCGCaCUCacugcCCCGAu -3'
miRNA:   3'- -UGCUUGGGCa---CGUG-GAGcuu--GGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17028 0.73 0.248484
Target:  5'- gGCGAucgcccucgcACCCGcGCugCcCGAGCCCGAGg -3'
miRNA:   3'- -UGCU----------UGGGCaCGugGaGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 5641 0.72 0.261641
Target:  5'- cGCcGACCCGaucgGCACCgcccggCGGGCCCGGAc -3'
miRNA:   3'- -UGcUUGGGCa---CGUGGa-----GCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 31765 0.71 0.304509
Target:  5'- cGCGGACCaccgCGgacgGCACCgaguaCGAGCCCGAc -3'
miRNA:   3'- -UGCUUGG----GCa---CGUGGa----GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 6143 0.71 0.327889
Target:  5'- uGCGGACCCGgucGCACCggcucaUCGAgguccccuccgGCCCGGc -3'
miRNA:   3'- -UGCUUGGGCa--CGUGG------AGCU-----------UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17954 0.7 0.369741
Target:  5'- uGCGcACCCGcGCACCcgcCGcGCCCGAGu -3'
miRNA:   3'- -UGCuUGGGCaCGUGGa--GCuUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 17108 0.69 0.40576
Target:  5'- uCGAACCCGagGUcgaACCcgaggucgaggUCGAACCCGAGg -3'
miRNA:   3'- uGCUUGGGCa-CG---UGG-----------AGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 40703 0.7 0.378538
Target:  5'- cGCGAccgcGCCCGUGCucguCgUCGAcagcgACCCGGg -3'
miRNA:   3'- -UGCU----UGGGCACGu---GgAGCU-----UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 40874 0.7 0.358515
Target:  5'- gGCGAACCUaaggGCACucgugaaccccgcgCUCGAACCCGGc -3'
miRNA:   3'- -UGCUUGGGca--CGUG--------------GAGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17365 0.74 0.190738
Target:  5'- gGCGAACCCGaGUGCgUCGAccccgcACCCGAGa -3'
miRNA:   3'- -UGCUUGGGCaCGUGgAGCU------UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 47713 0.7 0.387475
Target:  5'- gACGAcCCCGUGC-CgUCGGACUgGGAc -3'
miRNA:   3'- -UGCUuGGGCACGuGgAGCUUGGgCUU- -5'
26364 3' -56.7 NC_005345.2 + 17072 0.73 0.223815
Target:  5'- cCGAGCCCGagGCcgaGCCcgaggUCGAGCCCGAAc -3'
miRNA:   3'- uGCUUGGGCa-CG---UGG-----AGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 14717 0.71 0.335972
Target:  5'- gGCGAGCUCGUGCugCacacCGAGgCCGGc -3'
miRNA:   3'- -UGCUUGGGCACGugGa---GCUUgGGCUu -5'
26364 3' -56.7 NC_005345.2 + 9510 0.69 0.39655
Target:  5'- cGCGGGCCCuGUGCGCgcaGAccgACCCGGAg -3'
miRNA:   3'- -UGCUUGGG-CACGUGgagCU---UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 17156 0.68 0.463722
Target:  5'- uCGAACCCGaGguCgaggUCGAACCCGAGg -3'
miRNA:   3'- uGCUUGGGCaCguGg---AGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 36553 0.73 0.223815
Target:  5'- cCGAGCUCGUGCGCUUCGGgggcggcgACaCCGAGg -3'
miRNA:   3'- uGCUUGGGCACGUGGAGCU--------UG-GGCUU- -5'
26364 3' -56.7 NC_005345.2 + 37536 0.71 0.303753
Target:  5'- gGCGGGCugugauccccucgCCG-GCACCUCG-GCCCGAGg -3'
miRNA:   3'- -UGCUUG-------------GGCaCGUGGAGCuUGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.