miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 3' -61.7 NC_005345.2 + 19328 1.08 0.000215
Target:  5'- gUGGCCGAUCUGCGGGCCCGGUUGGACu -3'
miRNA:   3'- -ACCGGCUAGACGCCCGGGCCAACCUG- -5'
26366 3' -61.7 NC_005345.2 + 23679 0.77 0.059861
Target:  5'- cGGCCGGUCggGCGGGCCgagcgcacgcgagCGGUacgGGGCu -3'
miRNA:   3'- aCCGGCUAGa-CGCCCGG-------------GCCAa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 48241 0.77 0.06003
Target:  5'- cGGUCGAUCUGCGGGaCCCGGa----- -3'
miRNA:   3'- aCCGGCUAGACGCCC-GGGCCaaccug -5'
26366 3' -61.7 NC_005345.2 + 45560 0.75 0.077258
Target:  5'- cGGCCGAggUCgggGCGGGCC-GGUUGcGGCc -3'
miRNA:   3'- aCCGGCU--AGa--CGCCCGGgCCAAC-CUG- -5'
26366 3' -61.7 NC_005345.2 + 34993 0.74 0.101933
Target:  5'- aUGGUCGGUCUGCGGGCggUCGGc--GACg -3'
miRNA:   3'- -ACCGGCUAGACGCCCG--GGCCaacCUG- -5'
26366 3' -61.7 NC_005345.2 + 24488 0.73 0.123444
Target:  5'- cGGCCGGUCc-CGGGCCCGcg-GGAUc -3'
miRNA:   3'- aCCGGCUAGacGCCCGGGCcaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 24628 0.72 0.13756
Target:  5'- -uGCaCGAUCcgccgUGCGGGCCgGGUUGGuCg -3'
miRNA:   3'- acCG-GCUAG-----ACGCCCGGgCCAACCuG- -5'
26366 3' -61.7 NC_005345.2 + 27125 0.71 0.157284
Target:  5'- cGGCCGGgaccgUCcgGCGGGCCCGGcaugccgccgUGcGGCa -3'
miRNA:   3'- aCCGGCU-----AGa-CGCCCGGGCCa---------AC-CUG- -5'
26366 3' -61.7 NC_005345.2 + 7042 0.71 0.157284
Target:  5'- cGGCCGGcgaUCgagGC-GGCCCGGccGGACu -3'
miRNA:   3'- aCCGGCU---AGa--CGcCCGGGCCaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 30239 0.71 0.170314
Target:  5'- gUGaGCCGGUCgacgacggUGCGGGUCCGGccggucacaGGACa -3'
miRNA:   3'- -AC-CGGCUAG--------ACGCCCGGGCCaa-------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 43384 0.71 0.170314
Target:  5'- -cGCCGAgcacCUGCGccugcGCCCGGUugUGGACg -3'
miRNA:   3'- acCGGCUa---GACGCc----CGGGCCA--ACCUG- -5'
26366 3' -61.7 NC_005345.2 + 27852 0.7 0.182379
Target:  5'- gUGGCCGAUCcucgGCGGcGCCCccgacgacggGGACg -3'
miRNA:   3'- -ACCGGCUAGa---CGCC-CGGGccaa------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 15650 0.7 0.184301
Target:  5'- gGGCCGcaaUGCgaccGGGCCCGGUgGuGACa -3'
miRNA:   3'- aCCGGCuagACG----CCCGGGCCAaC-CUG- -5'
26366 3' -61.7 NC_005345.2 + 31228 0.7 0.194181
Target:  5'- cGGCCGGguguacgGCGGGUCCGGggucgGGuGCg -3'
miRNA:   3'- aCCGGCUaga----CGCCCGGGCCaa---CC-UG- -5'
26366 3' -61.7 NC_005345.2 + 34518 0.69 0.209868
Target:  5'- cGGUCGAg--GCGGGCCgCGGccucgcGGGCg -3'
miRNA:   3'- aCCGGCUagaCGCCCGG-GCCaa----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 1111 0.69 0.215335
Target:  5'- cGGCuCGAUgUGCGcGGCCCaGUUcGACc -3'
miRNA:   3'- aCCG-GCUAgACGC-CCGGGcCAAcCUG- -5'
26366 3' -61.7 NC_005345.2 + 32526 0.69 0.215335
Target:  5'- cGGcCCGAUCUgcGCGGGUCCGGg----- -3'
miRNA:   3'- aCC-GGCUAGA--CGCCCGGGCCaaccug -5'
26366 3' -61.7 NC_005345.2 + 30697 0.69 0.215335
Target:  5'- cGGCCGG-CUGCGgguGGCCgCGGUgaucggcgaGGACc -3'
miRNA:   3'- aCCGGCUaGACGC---CCGG-GCCAa--------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 43752 0.69 0.220924
Target:  5'- cGGCCGA-CcGcCGGGCCUGagUGGACu -3'
miRNA:   3'- aCCGGCUaGaC-GCCCGGGCcaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 18428 0.69 0.220924
Target:  5'- cGGCCGugauUCUGUGGGCgaaccugcgcCCGuGgUGGACc -3'
miRNA:   3'- aCCGGCu---AGACGCCCG----------GGC-CaACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.