miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 3' -61.7 NC_005345.2 + 19328 1.08 0.000215
Target:  5'- gUGGCCGAUCUGCGGGCCCGGUUGGACu -3'
miRNA:   3'- -ACCGGCUAGACGCCCGGGCCAACCUG- -5'
26366 3' -61.7 NC_005345.2 + 8410 0.67 0.312666
Target:  5'- -uGCCGGUCgacgGGGCgCGGcUGGACg -3'
miRNA:   3'- acCGGCUAGacg-CCCGgGCCaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 48341 0.66 0.335737
Target:  5'- cGGCCcccgggcgagcaGGUgUaaGCGGGCCCGGUcGG-Ca -3'
miRNA:   3'- aCCGG------------CUAgA--CGCCCGGGCCAaCCuG- -5'
26366 3' -61.7 NC_005345.2 + 9443 0.66 0.343699
Target:  5'- gUGGcCCGAgcUCgucccggGCGGuGUCCGGUgaugcgGGGCu -3'
miRNA:   3'- -ACC-GGCU--AGa------CGCC-CGGGCCAa-----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 24488 0.73 0.123444
Target:  5'- cGGCCGGUCc-CGGGCCCGcg-GGAUc -3'
miRNA:   3'- aCCGGCUAGacGCCCGGGCcaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 24628 0.72 0.13756
Target:  5'- -uGCaCGAUCcgccgUGCGGGCCgGGUUGGuCg -3'
miRNA:   3'- acCG-GCUAG-----ACGCCCGGgCCAACCuG- -5'
26366 3' -61.7 NC_005345.2 + 27852 0.7 0.182379
Target:  5'- gUGGCCGAUCcucgGCGGcGCCCccgacgacggGGACg -3'
miRNA:   3'- -ACCGGCUAGa---CGCC-CGGGccaa------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 15650 0.7 0.184301
Target:  5'- gGGCCGcaaUGCgaccGGGCCCGGUgGuGACa -3'
miRNA:   3'- aCCGGCuagACG----CCCGGGCCAaC-CUG- -5'
26366 3' -61.7 NC_005345.2 + 32526 0.69 0.215335
Target:  5'- cGGcCCGAUCUgcGCGGGUCCGGg----- -3'
miRNA:   3'- aCC-GGCUAGA--CGCCCGGGCCaaccug -5'
26366 3' -61.7 NC_005345.2 + 16057 0.67 0.290818
Target:  5'- cGGCUgcgucaGAUC-GCGGGgUCGGUgugaUGGACa -3'
miRNA:   3'- aCCGG------CUAGaCGCCCgGGCCA----ACCUG- -5'
26366 3' -61.7 NC_005345.2 + 5416 0.69 0.223765
Target:  5'- cGGCCGAgcgUCUcgccgaguucuucgGCGGcGCCCGGgucggccguagGGGCg -3'
miRNA:   3'- aCCGGCU---AGA--------------CGCC-CGGGCCaa---------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 30697 0.69 0.215335
Target:  5'- cGGCCGG-CUGCGgguGGCCgCGGUgaucggcgaGGACc -3'
miRNA:   3'- aCCGGCUaGACGC---CCGG-GCCAa--------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 23679 0.77 0.059861
Target:  5'- cGGCCGGUCggGCGGGCCgagcgcacgcgagCGGUacgGGGCu -3'
miRNA:   3'- aCCGGCUAGa-CGCCCGG-------------GCCAa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 9696 0.69 0.228956
Target:  5'- aGGCCGAUCaGCGGGCCgcCGcGUgagccgcgccgcgcGGGCc -3'
miRNA:   3'- aCCGGCUAGaCGCCCGG--GC-CAa-------------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 48241 0.77 0.06003
Target:  5'- cGGUCGAUCUGCGGGaCCCGGa----- -3'
miRNA:   3'- aCCGGCUAGACGCCC-GGGCCaaccug -5'
26366 3' -61.7 NC_005345.2 + 1111 0.69 0.215335
Target:  5'- cGGCuCGAUgUGCGcGGCCCaGUUcGACc -3'
miRNA:   3'- aCCG-GCUAgACGC-CCGGGcCAAcCUG- -5'
26366 3' -61.7 NC_005345.2 + 36151 0.69 0.238435
Target:  5'- gGGCCGccgacAUCgGCGGGUCCGGcgugcagcgUUGGuCg -3'
miRNA:   3'- aCCGGC-----UAGaCGCCCGGGCC---------AACCuG- -5'
26366 3' -61.7 NC_005345.2 + 35745 0.67 0.320221
Target:  5'- cGGCCGAaCgagcgGCGGcauCCCGGggcaGGACu -3'
miRNA:   3'- aCCGGCUaGa----CGCCc--GGGCCaa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 34993 0.74 0.101933
Target:  5'- aUGGUCGGUCUGCGGGCggUCGGc--GACg -3'
miRNA:   3'- -ACCGGCUAGACGCCCG--GGCCaacCUG- -5'
26366 3' -61.7 NC_005345.2 + 7042 0.71 0.157284
Target:  5'- cGGCCGGcgaUCgagGC-GGCCCGGccGGACu -3'
miRNA:   3'- aCCGGCU---AGa--CGcCCGGGCCaaCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.