miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 3' -61.7 NC_005345.2 + 1111 0.69 0.215335
Target:  5'- cGGCuCGAUgUGCGcGGCCCaGUUcGACc -3'
miRNA:   3'- aCCG-GCUAgACGC-CCGGGcCAAcCUG- -5'
26366 3' -61.7 NC_005345.2 + 1475 0.69 0.232473
Target:  5'- cGGCCGugaUGCGgagcGGCCCGcGgUGGACc -3'
miRNA:   3'- aCCGGCuagACGC----CCGGGC-CaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 3410 0.67 0.312666
Target:  5'- gGGCUGAgagaggCgGCGGGCgCGGcggcGGGCg -3'
miRNA:   3'- aCCGGCUa-----GaCGCCCGgGCCaa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 3971 0.69 0.238435
Target:  5'- cGGCauacuCGG-CUGCGacgucaGGCCCGGUcGGACg -3'
miRNA:   3'- aCCG-----GCUaGACGC------CCGGGCCAaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 4341 0.66 0.357543
Target:  5'- cGGCCGAgccgggguccugccUCgggcggGCGGGCCgcuCGGUgGGGg -3'
miRNA:   3'- aCCGGCU--------------AGa-----CGCCCGG---GCCAaCCUg -5'
26366 3' -61.7 NC_005345.2 + 5416 0.69 0.223765
Target:  5'- cGGCCGAgcgUCUcgccgaguucuucgGCGGcGCCCGGgucggccguagGGGCg -3'
miRNA:   3'- aCCGGCU---AGA--------------CGCC-CGGGCCaa---------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 6321 0.67 0.32328
Target:  5'- cGGCCGAaguacugcacgagcgUCUcguacggcacgaGCGGcGCCgGGUUGGcCg -3'
miRNA:   3'- aCCGGCU---------------AGA------------CGCC-CGGgCCAACCuG- -5'
26366 3' -61.7 NC_005345.2 + 7042 0.71 0.157284
Target:  5'- cGGCCGGcgaUCgagGC-GGCCCGGccGGACu -3'
miRNA:   3'- aCCGGCU---AGa--CGcCCGGGCCaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 8410 0.67 0.312666
Target:  5'- -uGCCGGUCgacgGGGCgCGGcUGGACg -3'
miRNA:   3'- acCGGCUAGacg-CCCGgGCCaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 9443 0.66 0.343699
Target:  5'- gUGGcCCGAgcUCgucccggGCGGuGUCCGGUgaugcgGGGCu -3'
miRNA:   3'- -ACC-GGCU--AGa------CGCC-CGGGCCAa-----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 9596 0.67 0.283805
Target:  5'- cGGCCGGgaccggCcGCGGGgCCGGUgcacGACc -3'
miRNA:   3'- aCCGGCUa-----GaCGCCCgGGCCAac--CUG- -5'
26366 3' -61.7 NC_005345.2 + 9696 0.69 0.228956
Target:  5'- aGGCCGAUCaGCGGGCCgcCGcGUgagccgcgccgcgcGGGCc -3'
miRNA:   3'- aCCGGCUAGaCGCCCGG--GC-CAa-------------CCUG- -5'
26366 3' -61.7 NC_005345.2 + 15650 0.7 0.184301
Target:  5'- gGGCCGcaaUGCgaccGGGCCCGGUgGuGACa -3'
miRNA:   3'- aCCGGCuagACG----CCCGGGCCAaC-CUG- -5'
26366 3' -61.7 NC_005345.2 + 15689 0.68 0.248865
Target:  5'- cGGCCGAUCUGCcgcugcagguccucGGcgaaucCCCGGgcgcucgGGACg -3'
miRNA:   3'- aCCGGCUAGACG--------------CCc-----GGGCCaa-----CCUG- -5'
26366 3' -61.7 NC_005345.2 + 16057 0.67 0.290818
Target:  5'- cGGCUgcgucaGAUC-GCGGGgUCGGUgugaUGGACa -3'
miRNA:   3'- aCCGG------CUAGaCGCCCgGGCCA----ACCUG- -5'
26366 3' -61.7 NC_005345.2 + 18428 0.69 0.220924
Target:  5'- cGGCCGugauUCUGUGGGCgaaccugcgcCCGuGgUGGACc -3'
miRNA:   3'- aCCGGCu---AGACGCCCG----------GGC-CaACCUG- -5'
26366 3' -61.7 NC_005345.2 + 19328 1.08 0.000215
Target:  5'- gUGGCCGAUCUGCGGGCCCGGUUGGACu -3'
miRNA:   3'- -ACCGGCUAGACGCCCGGGCCAACCUG- -5'
26366 3' -61.7 NC_005345.2 + 23679 0.77 0.059861
Target:  5'- cGGCCGGUCggGCGGGCCgagcgcacgcgagCGGUacgGGGCu -3'
miRNA:   3'- aCCGGCUAGa-CGCCCGG-------------GCCAa--CCUG- -5'
26366 3' -61.7 NC_005345.2 + 24488 0.73 0.123444
Target:  5'- cGGCCGGUCc-CGGGCCCGcg-GGAUc -3'
miRNA:   3'- aCCGGCUAGacGCCCGGGCcaaCCUG- -5'
26366 3' -61.7 NC_005345.2 + 24628 0.72 0.13756
Target:  5'- -uGCaCGAUCcgccgUGCGGGCCgGGUUGGuCg -3'
miRNA:   3'- acCG-GCUAG-----ACGCCCGGgCCAACCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.