miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 5' -49.3 NC_005345.2 + 19367 1.16 0.001558
Target:  5'- cCCGUCGAACCCAAAGUGAAGAUCGGCg -3'
miRNA:   3'- -GGCAGCUUGGGUUUCACUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 24761 0.8 0.326077
Target:  5'- gCUGUCGcAGCCCGAAGUGcGGGcgucguccgaccUCGGCa -3'
miRNA:   3'- -GGCAGC-UUGGGUUUCACuUCU------------AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 17154 0.79 0.360191
Target:  5'- -gGUCGAACCCGAGGUcGAGGUCGa- -3'
miRNA:   3'- ggCAGCUUGGGUUUCAcUUCUAGCcg -5'
26366 5' -49.3 NC_005345.2 + 17118 0.79 0.360191
Target:  5'- -gGUCGAACCCGAGGUcGAGGUCGa- -3'
miRNA:   3'- ggCAGCUUGGGUUUCAcUUCUAGCcg -5'
26366 5' -49.3 NC_005345.2 + 29962 0.78 0.387365
Target:  5'- gCCGUCGGGCUCGucGUcGAGGGgcucgUCGGCg -3'
miRNA:   3'- -GGCAGCUUGGGUuuCA-CUUCU-----AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 21279 0.78 0.414883
Target:  5'- gCCGUCGucCCCGucGUcgggggcgccgccGAGGAUCGGCc -3'
miRNA:   3'- -GGCAGCuuGGGUuuCA-------------CUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 27242 0.77 0.476476
Target:  5'- uUCGUCGAcGCCCGGAGcGAGGggCGGa -3'
miRNA:   3'- -GGCAGCU-UGGGUUUCaCUUCuaGCCg -5'
26366 5' -49.3 NC_005345.2 + 19025 0.76 0.508388
Target:  5'- aCGUCGccGCCCGAgccgucGGUacGggGGUCGGCg -3'
miRNA:   3'- gGCAGCu-UGGGUU------UCA--CuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 9327 0.76 0.530156
Target:  5'- cCCG-CGAugCCGAGGgu--GGUCGGCa -3'
miRNA:   3'- -GGCaGCUugGGUUUCacuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 38861 0.75 0.581378
Target:  5'- cCCGcUCGggUCCGgugucgccggccgcGAGUGGacggcagAGAUCGGCg -3'
miRNA:   3'- -GGC-AGCuuGGGU--------------UUCACU-------UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 41615 0.75 0.585889
Target:  5'- gCCGUCGcACCCucGGgGAucucgauccccGGGUCGGCg -3'
miRNA:   3'- -GGCAGCuUGGGuuUCaCU-----------UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 26924 0.74 0.608533
Target:  5'- aCGUCGAGCgCAuGGUcGAGGUCaGGCa -3'
miRNA:   3'- gGCAGCUUGgGUuUCAcUUCUAG-CCG- -5'
26366 5' -49.3 NC_005345.2 + 10660 0.74 0.631263
Target:  5'- aCCG-CGGACC---GGUGggGcgCGGCg -3'
miRNA:   3'- -GGCaGCUUGGguuUCACuuCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 10968 0.74 0.631263
Target:  5'- -aGUCGAacagguGCCCGucGUacGGAUCGGCg -3'
miRNA:   3'- ggCAGCU------UGGGUuuCAcuUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 27144 0.73 0.665335
Target:  5'- gCGUCGAgcuGCCCGAGGcGcuGcgCGGCg -3'
miRNA:   3'- gGCAGCU---UGGGUUUCaCuuCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 21494 0.72 0.710243
Target:  5'- gUCGUcCGGGCCC---GUGAAGuucuGUCGGCg -3'
miRNA:   3'- -GGCA-GCUUGGGuuuCACUUC----UAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 44413 0.72 0.732255
Target:  5'- -aGUCGAGCCC--GGUGAAcccgagcgcgcuGAUCGGa -3'
miRNA:   3'- ggCAGCUUGGGuuUCACUU------------CUAGCCg -5'
26366 5' -49.3 NC_005345.2 + 25658 0.72 0.732255
Target:  5'- gCCaGUCGGACgagCCGAAGUGA---UCGGCc -3'
miRNA:   3'- -GG-CAGCUUG---GGUUUCACUucuAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 30278 0.72 0.73878
Target:  5'- cUCGUCGAGCCCGAgcAGccGAAGGaguagcccgguggCGGCg -3'
miRNA:   3'- -GGCAGCUUGGGUU--UCa-CUUCUa------------GCCG- -5'
26366 5' -49.3 NC_005345.2 + 3159 0.72 0.743107
Target:  5'- gCGUCGGcgaGCUCGucgGGGUGccGGGUCGGCg -3'
miRNA:   3'- gGCAGCU---UGGGU---UUCACu-UCUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.