miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 5' -49.3 NC_005345.2 + 1470 0.66 0.961996
Target:  5'- gCCGUCGGccgugaugcggagcgGCCCGcGGUGGAcccgcuGAUCuGCc -3'
miRNA:   3'- -GGCAGCU---------------UGGGUuUCACUU------CUAGcCG- -5'
26366 5' -49.3 NC_005345.2 + 1544 0.68 0.891599
Target:  5'- gCGUCGAGCCaaccgggCAccGUGAGG--CGGCa -3'
miRNA:   3'- gGCAGCUUGG-------GUuuCACUUCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 3159 0.72 0.743107
Target:  5'- gCGUCGGcgaGCUCGucgGGGUGccGGGUCGGCg -3'
miRNA:   3'- gGCAGCU---UGGGU---UUCACu-UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 3600 0.66 0.951984
Target:  5'- gUCGUCG-GCCCAcAGGUGAccccaCGGCc -3'
miRNA:   3'- -GGCAGCuUGGGU-UUCACUucua-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 3848 0.68 0.906608
Target:  5'- gCGUgCGGACCCGGcu----GAUCGGCg -3'
miRNA:   3'- gGCA-GCUUGGGUUucacuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 4153 0.66 0.964253
Target:  5'- cUCGUCGAGC---GGGUGucGAcgCGGCa -3'
miRNA:   3'- -GGCAGCUUGgguUUCACuuCUa-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 4366 0.66 0.967803
Target:  5'- gCGggCGGGCCgCucGGUGggGGugUCGGUc -3'
miRNA:   3'- gGCa-GCUUGG-GuuUCACuuCU--AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 5231 0.67 0.931077
Target:  5'- gCCGUCGGgguGCCCGcgguacacgguggGcGUGAcGggCGGCa -3'
miRNA:   3'- -GGCAGCU---UGGGU-------------UuCACUuCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 5605 0.67 0.944406
Target:  5'- gCCGUgGGGCgCCGGgcucguggccgacgcGGUGAucgccgacccGAUCGGCa -3'
miRNA:   3'- -GGCAgCUUG-GGUU---------------UCACUu---------CUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 5755 0.66 0.960437
Target:  5'- gCCGagGAcuGCgCCGAGGcGGuccgcAGGUCGGCg -3'
miRNA:   3'- -GGCagCU--UG-GGUUUCaCU-----UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 6414 0.67 0.937168
Target:  5'- uUCG-CGGGCCCGccGUc--GGUCGGCg -3'
miRNA:   3'- -GGCaGCUUGGGUuuCAcuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 6486 0.69 0.863857
Target:  5'- aCGgcggCGAGCCCGAggcguggacgccgcaGGgcucGAAGAUCGaGCa -3'
miRNA:   3'- gGCa---GCUUGGGUU---------------UCa---CUUCUAGC-CG- -5'
26366 5' -49.3 NC_005345.2 + 7163 0.68 0.919715
Target:  5'- -gGUCGGACCCGcuGUcGcAGGAacugCGGCa -3'
miRNA:   3'- ggCAGCUUGGGUuuCA-C-UUCUa---GCCG- -5'
26366 5' -49.3 NC_005345.2 + 7474 0.67 0.937168
Target:  5'- gUCGcCGGuaGCCCAc-GUGAAGGgagUGGCg -3'
miRNA:   3'- -GGCaGCU--UGGGUuuCACUUCUa--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 7810 0.68 0.906608
Target:  5'- gCCGcCGGACgCC---GUGAAcGUCGGCg -3'
miRNA:   3'- -GGCaGCUUG-GGuuuCACUUcUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 9132 0.7 0.802297
Target:  5'- gCCGUCGGuccggaacagggugACCCGAGacacgggcGUGuAGGAcUCGGCg -3'
miRNA:   3'- -GGCAGCU--------------UGGGUUU--------CAC-UUCU-AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 9327 0.76 0.530156
Target:  5'- cCCG-CGAugCCGAGGgu--GGUCGGCa -3'
miRNA:   3'- -GGCaGCUugGGUUUCacuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 9722 0.7 0.824557
Target:  5'- uCCGUCG---CCGGGGUcGAgcGGGUCGGCc -3'
miRNA:   3'- -GGCAGCuugGGUUUCA-CU--UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 10187 0.66 0.95635
Target:  5'- aCG-CGAAagaggaagugauCCCAugccGAAGAUCGGCa -3'
miRNA:   3'- gGCaGCUU------------GGGUuucaCUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 10660 0.74 0.631263
Target:  5'- aCCG-CGGACC---GGUGggGcgCGGCg -3'
miRNA:   3'- -GGCaGCUUGGguuUCACuuCuaGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.