miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 5' -49.3 NC_005345.2 + 19367 1.16 0.001558
Target:  5'- cCCGUCGAACCCAAAGUGAAGAUCGGCg -3'
miRNA:   3'- -GGCAGCUUGGGUUUCACUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 29097 0.68 0.913308
Target:  5'- cUCGUgGGACaCCGAGuccAAGAUCGGCc -3'
miRNA:   3'- -GGCAgCUUG-GGUUUcacUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 7163 0.68 0.919715
Target:  5'- -gGUCGGACCCGcuGUcGcAGGAacugCGGCa -3'
miRNA:   3'- ggCAGCUUGGGUuuCA-C-UUCUa---GCCG- -5'
26366 5' -49.3 NC_005345.2 + 17064 0.66 0.967803
Target:  5'- -gGUCGAACCCGagcccgaggccGAGcccGAGGUCGaGCc -3'
miRNA:   3'- ggCAGCUUGGGU-----------UUCac-UUCUAGC-CG- -5'
26366 5' -49.3 NC_005345.2 + 27242 0.77 0.476476
Target:  5'- uUCGUCGAcGCCCGGAGcGAGGggCGGa -3'
miRNA:   3'- -GGCAGCU-UGGGUUUCaCUUCuaGCCg -5'
26366 5' -49.3 NC_005345.2 + 38861 0.75 0.581378
Target:  5'- cCCGcUCGggUCCGgugucgccggccgcGAGUGGacggcagAGAUCGGCg -3'
miRNA:   3'- -GGC-AGCuuGGGU--------------UUCACU-------UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 27144 0.73 0.665335
Target:  5'- gCGUCGAgcuGCCCGAGGcGcuGcgCGGCg -3'
miRNA:   3'- gGCAGCU---UGGGUUUCaCuuCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 30278 0.72 0.73878
Target:  5'- cUCGUCGAGCCCGAgcAGccGAAGGaguagcccgguggCGGCg -3'
miRNA:   3'- -GGCAGCUUGGGUU--UCa-CUUCUa------------GCCG- -5'
26366 5' -49.3 NC_005345.2 + 15421 0.7 0.842991
Target:  5'- aCCGgcUCGGGgaauCCCGAAGc-GGGGUCGGCa -3'
miRNA:   3'- -GGC--AGCUU----GGGUUUCacUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 3848 0.68 0.906608
Target:  5'- gCGUgCGGACCCGGcu----GAUCGGCg -3'
miRNA:   3'- gGCA-GCUUGGGUUucacuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 6486 0.69 0.863857
Target:  5'- aCGgcggCGAGCCCGAggcguggacgccgcaGGgcucGAAGAUCGaGCa -3'
miRNA:   3'- gGCa---GCUUGGGUU---------------UCa---CUUCUAGC-CG- -5'
26366 5' -49.3 NC_005345.2 + 13424 0.71 0.764438
Target:  5'- aCCGUCGAcgucUCCGGAGUGuccGGUacCGGCg -3'
miRNA:   3'- -GGCAGCUu---GGGUUUCACuu-CUA--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 24761 0.8 0.326077
Target:  5'- gCUGUCGcAGCCCGAAGUGcGGGcgucguccgaccUCGGCa -3'
miRNA:   3'- -GGCAGC-UUGGGUUUCACuUCU------------AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 44476 0.69 0.868846
Target:  5'- gCGUCGAGCCgAGcAGcGAAGGcgaCGGCc -3'
miRNA:   3'- gGCAGCUUGGgUU-UCaCUUCUa--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 17118 0.79 0.360191
Target:  5'- -gGUCGAACCCGAGGUcGAGGUCGa- -3'
miRNA:   3'- ggCAGCUUGGGUUUCAcUUCUAGCcg -5'
26366 5' -49.3 NC_005345.2 + 35975 0.72 0.743107
Target:  5'- cCUGUCGGACCCcggccgcauGUgGGAGA-CGGCg -3'
miRNA:   3'- -GGCAGCUUGGGuuu------CA-CUUCUaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 23972 0.68 0.891599
Target:  5'- gCUGUCGcGGCCgCGAGGcUGggGcaagucgccguucGUCGGCg -3'
miRNA:   3'- -GGCAGC-UUGG-GUUUC-ACuuC-------------UAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 30012 0.68 0.913308
Target:  5'- aCGUCccGgCCGAGGUcgccGAgcGGAUCGGCg -3'
miRNA:   3'- gGCAGcuUgGGUUUCA----CU--UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 17154 0.79 0.360191
Target:  5'- -gGUCGAACCCGAGGUcGAGGUCGa- -3'
miRNA:   3'- ggCAGCUUGGGUUUCAcUUCUAGCcg -5'
26366 5' -49.3 NC_005345.2 + 10660 0.74 0.631263
Target:  5'- aCCG-CGGACC---GGUGggGcgCGGCg -3'
miRNA:   3'- -GGCaGCUUGGguuUCACuuCuaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.