miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 3' -65.8 NC_005345.2 + 22517 1.1 0.000101
Target:  5'- gGGUCGCCCGGCCGGGCGCCCGACACGg -3'
miRNA:   3'- -CCAGCGGGCCGGCCCGCGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 26635 0.83 0.013911
Target:  5'- cGGgCGCCCGGCCGGGCGaCCCGugucgggGCGCu -3'
miRNA:   3'- -CCaGCGGGCCGGCCCGC-GGGC-------UGUGc -5'
26374 3' -65.8 NC_005345.2 + 47608 0.78 0.034479
Target:  5'- cGGU-GCCCGGuuGGcucgacGCGCCCGACACc -3'
miRNA:   3'- -CCAgCGGGCCggCC------CGCGGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 13160 0.77 0.035432
Target:  5'- uGGUCGCCgucucccacaugCGGCCGGG-GUCCGACAgGa -3'
miRNA:   3'- -CCAGCGG------------GCCGGCCCgCGGGCUGUgC- -5'
26374 3' -65.8 NC_005345.2 + 27684 0.77 0.03641
Target:  5'- cGGcCGCgUGaCCGGGCGCgCCGACACGg -3'
miRNA:   3'- -CCaGCGgGCcGGCCCGCG-GGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 14849 0.77 0.040594
Target:  5'- -cUUGCCgGGCugcagCGGGCGCUCGACGCGg -3'
miRNA:   3'- ccAGCGGgCCG-----GCCCGCGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 17516 0.75 0.050422
Target:  5'- cGGUCG-CCGGCCGGGCGaggaCCGuguCGCc -3'
miRNA:   3'- -CCAGCgGGCCGGCCCGCg---GGCu--GUGc -5'
26374 3' -65.8 NC_005345.2 + 21584 0.75 0.054676
Target:  5'- cGG-CGCCCGGCCGccGGgGUCCGACGa- -3'
miRNA:   3'- -CCaGCGGGCCGGC--CCgCGGGCUGUgc -5'
26374 3' -65.8 NC_005345.2 + 21325 0.75 0.057703
Target:  5'- gGGUacaGCUCGGUCGGGUccucGCCCGuGCGCGg -3'
miRNA:   3'- -CCAg--CGGGCCGGCCCG----CGGGC-UGUGC- -5'
26374 3' -65.8 NC_005345.2 + 40765 0.74 0.064252
Target:  5'- cGGcUCGUCgGGCCGGuCGgCCGGCGCGg -3'
miRNA:   3'- -CC-AGCGGgCCGGCCcGCgGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 7034 0.74 0.065998
Target:  5'- cGGUCGaCCGGCCGgcgaucgaGGCgGCCCGGC-CGg -3'
miRNA:   3'- -CCAGCgGGCCGGC--------CCG-CGGGCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 23673 0.74 0.065998
Target:  5'- gGGUCGCggCCGGUCGGGCgGgCCGAgCGCa -3'
miRNA:   3'- -CCAGCG--GGCCGGCCCG-CgGGCU-GUGc -5'
26374 3' -65.8 NC_005345.2 + 27108 0.74 0.069258
Target:  5'- cGGUCggcucgugaGCUCGGCCGGGaccguccggcggGCCCGGCAUGc -3'
miRNA:   3'- -CCAG---------CGGGCCGGCCCg-----------CGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 11568 0.74 0.069629
Target:  5'- -aUCGCCCGGCagcucgacgaCGGGCGCCUcgcgGugGCGu -3'
miRNA:   3'- ccAGCGGGCCG----------GCCCGCGGG----CugUGC- -5'
26374 3' -65.8 NC_005345.2 + 34493 0.74 0.071516
Target:  5'- cGcCGCCCGGCC-GGUGCCgagGACGCGg -3'
miRNA:   3'- cCaGCGGGCCGGcCCGCGGg--CUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 6441 0.73 0.079565
Target:  5'- uGGUCGCcgauauCCaGCCGGGUcgcGCCCGGCAUc -3'
miRNA:   3'- -CCAGCG------GGcCGGCCCG---CGGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 31639 0.73 0.08106
Target:  5'- -cUCGCCCGGCCGgcgaccGGCGgcccgcaguuccuuCCCGACGCc -3'
miRNA:   3'- ccAGCGGGCCGGC------CCGC--------------GGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 1331 0.72 0.086163
Target:  5'- uGGUUG-CCGGCCGGGUcgcgguaacgcGCCUGcCACGa -3'
miRNA:   3'- -CCAGCgGGCCGGCCCG-----------CGGGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 17839 0.72 0.086163
Target:  5'- --cCGCCCGGCCgccGGGC-CCCGGCgACa -3'
miRNA:   3'- ccaGCGGGCCGG---CCCGcGGGCUG-UGc -5'
26374 3' -65.8 NC_005345.2 + 22858 0.72 0.088476
Target:  5'- cGGUCGCCgGGUCGGuGCGCUU--CGCGa -3'
miRNA:   3'- -CCAGCGGgCCGGCC-CGCGGGcuGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.